Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2161

Experiment: MoYLS4 with Fusidic 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2159 and DvMF_2160 are separated by 196 nucleotidesDvMF_2160 and DvMF_2161 are separated by 142 nucleotidesDvMF_2161 and DvMF_2162 overlap by 4 nucleotides DvMF_2159: DvMF_2159 - RND efflux system, outer membrane lipoprotein, NodT family (RefSeq), at 2,692,492 to 2,694,081 _2159 DvMF_2160: DvMF_2160 - hypothetical protein (RefSeq), at 2,694,278 to 2,694,454 _2160 DvMF_2161: DvMF_2161 - transcriptional regulator, MarR family (RefSeq), at 2,694,597 to 2,695,127 _2161 DvMF_2162: DvMF_2162 - RND efflux system, outer membrane lipoprotein, NodT family (RefSeq), at 2,695,124 to 2,696,593 _2162 Position (kb) 2694 2695 2696Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2693.849 kb on - strand, within DvMF_2159at 2693.860 kb on + strand, within DvMF_2159at 2693.955 kb on + strandat 2693.962 kb on + strandat 2693.963 kb on - strandat 2693.970 kb on - strandat 2694.000 kb on - strandat 2694.106 kb on - strandat 2694.182 kb on - strandat 2694.197 kb on - strandat 2694.233 kb on - strandat 2694.252 kb on + strandat 2694.410 kb on + strand, within DvMF_2160at 2694.749 kb on + strand, within DvMF_2161at 2694.784 kb on + strand, within DvMF_2161at 2694.784 kb on + strand, within DvMF_2161at 2694.989 kb on + strand, within DvMF_2161at 2695.123 kb on - strandat 2695.198 kb on - strandat 2695.391 kb on + strand, within DvMF_2162at 2695.973 kb on + strand, within DvMF_2162at 2696.082 kb on - strand, within DvMF_2162

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Fusidic 0.03125 mg/ml
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2,693,849 - DvMF_2159 0.85 -0.4
2,693,860 + DvMF_2159 0.86 -0.6
2,693,955 + -0.8
2,693,962 + -0.7
2,693,963 - -1.5
2,693,970 - -4.0
2,694,000 - +0.0
2,694,106 - -0.1
2,694,182 - -0.1
2,694,197 - -1.3
2,694,233 - -0.3
2,694,252 + -0.3
2,694,410 + DvMF_2160 0.75 -0.5
2,694,749 + DvMF_2161 0.29 -0.5
2,694,784 + DvMF_2161 0.35 -0.3
2,694,784 + DvMF_2161 0.35 +0.0
2,694,989 + DvMF_2161 0.74 -0.1
2,695,123 - +0.0
2,695,198 - -1.0
2,695,391 + DvMF_2162 0.18 -4.4
2,695,973 + DvMF_2162 0.58 -2.8
2,696,082 - DvMF_2162 0.65 -1.3

Or see this region's nucleotide sequence