Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1936

Experiment: MoYLS4 with Fusidic 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1935 and DvMF_1936 are separated by 180 nucleotidesDvMF_1936 and DvMF_1937 are separated by 136 nucleotides DvMF_1935: DvMF_1935 - hypothetical protein (RefSeq), at 2,388,346 to 2,388,756 _1935 DvMF_1936: DvMF_1936 - Deoxyribodipyrimidine photo-lyase (RefSeq), at 2,388,937 to 2,390,421 _1936 DvMF_1937: DvMF_1937 - response regulator receiver protein (RefSeq), at 2,390,558 to 2,391,367 _1937 Position (kb) 2388 2389 2390 2391Strain fitness (log2 ratio) -2 -1 0 1 2at 2388.140 kb on + strandat 2388.318 kb on + strandat 2388.505 kb on + strand, within DvMF_1935at 2388.550 kb on + strand, within DvMF_1935at 2388.628 kb on + strand, within DvMF_1935at 2388.714 kb on + strand, within DvMF_1935at 2388.746 kb on - strandat 2388.759 kb on - strandat 2388.759 kb on - strandat 2388.935 kb on + strandat 2388.938 kb on - strandat 2388.943 kb on - strandat 2388.943 kb on - strandat 2388.943 kb on - strandat 2388.943 kb on - strandat 2388.943 kb on - strandat 2389.164 kb on - strand, within DvMF_1936at 2389.183 kb on + strand, within DvMF_1936at 2389.362 kb on + strand, within DvMF_1936at 2389.380 kb on - strand, within DvMF_1936at 2389.652 kb on - strand, within DvMF_1936at 2389.903 kb on + strand, within DvMF_1936at 2389.908 kb on + strand, within DvMF_1936at 2390.119 kb on + strand, within DvMF_1936at 2390.147 kb on - strand, within DvMF_1936at 2390.295 kb on - strandat 2390.521 kb on + strandat 2390.622 kb on - strandat 2391.126 kb on + strand, within DvMF_1937at 2391.216 kb on - strand, within DvMF_1937at 2391.391 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Fusidic 0.03125 mg/ml
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2,388,140 + -1.4
2,388,318 + -1.2
2,388,505 + DvMF_1935 0.39 +2.2
2,388,550 + DvMF_1935 0.50 -0.3
2,388,628 + DvMF_1935 0.69 -0.3
2,388,714 + DvMF_1935 0.90 -1.3
2,388,746 - -0.8
2,388,759 - -0.2
2,388,759 - -1.7
2,388,935 + -0.0
2,388,938 - -0.1
2,388,943 - -1.4
2,388,943 - -0.9
2,388,943 - +0.5
2,388,943 - -2.2
2,388,943 - -1.1
2,389,164 - DvMF_1936 0.15 -1.1
2,389,183 + DvMF_1936 0.17 -1.0
2,389,362 + DvMF_1936 0.29 -0.8
2,389,380 - DvMF_1936 0.30 -0.4
2,389,652 - DvMF_1936 0.48 -1.0
2,389,903 + DvMF_1936 0.65 -0.3
2,389,908 + DvMF_1936 0.65 -1.3
2,390,119 + DvMF_1936 0.80 -0.6
2,390,147 - DvMF_1936 0.81 -1.3
2,390,295 - -1.1
2,390,521 + -0.6
2,390,622 - -0.7
2,391,126 + DvMF_1937 0.70 -0.7
2,391,216 - DvMF_1937 0.81 -0.4
2,391,391 + +0.5

Or see this region's nucleotide sequence