Experiment: MoYLS4 with Fusidic 0.03125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1888 and DvMF_1889 are separated by 8 nucleotides DvMF_1889 and DvMF_1890 are separated by 418 nucleotides DvMF_1890 and DvMF_1891 are separated by 389 nucleotides
DvMF_1888: DvMF_1888 - DNA-3-methyladenine glycosylase I (RefSeq), at 2,324,731 to 2,325,333
_1888
DvMF_1889: DvMF_1889 - hypothetical protein (RefSeq), at 2,325,342 to 2,325,821
_1889
DvMF_1890: DvMF_1890 - iron-containing alcohol dehydrogenase (RefSeq), at 2,326,240 to 2,327,316
_1890
DvMF_1891: DvMF_1891 - Glutamine--scyllo-inositol transaminase (RefSeq), at 2,327,706 to 2,328,887
_1891
Position (kb)
2326
2327
2328 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2325.294 kb on + strand at 2325.398 kb on - strand, within DvMF_1889 at 2325.567 kb on + strand, within DvMF_1889 at 2325.587 kb on - strand, within DvMF_1889 at 2325.646 kb on - strand, within DvMF_1889 at 2325.819 kb on + strand at 2325.882 kb on + strand at 2325.907 kb on - strand at 2326.223 kb on + strand at 2326.231 kb on - strand at 2326.231 kb on - strand at 2326.233 kb on - strand at 2326.292 kb on - strand at 2326.459 kb on - strand, within DvMF_1890 at 2326.506 kb on + strand, within DvMF_1890 at 2326.514 kb on - strand, within DvMF_1890 at 2326.649 kb on + strand, within DvMF_1890 at 2326.787 kb on - strand, within DvMF_1890 at 2326.834 kb on - strand, within DvMF_1890 at 2326.876 kb on + strand, within DvMF_1890 at 2327.023 kb on + strand, within DvMF_1890 at 2327.056 kb on + strand, within DvMF_1890 at 2327.160 kb on + strand, within DvMF_1890 at 2327.174 kb on + strand, within DvMF_1890 at 2327.196 kb on + strand, within DvMF_1890 at 2327.204 kb on - strand, within DvMF_1890 at 2327.255 kb on + strand at 2327.335 kb on - strand at 2327.405 kb on - strand at 2327.515 kb on - strand at 2327.552 kb on - strand at 2327.703 kb on - strand at 2327.749 kb on - strand at 2327.749 kb on - strand at 2327.798 kb on - strand at 2327.798 kb on - strand at 2327.967 kb on - strand, within DvMF_1891 at 2327.980 kb on - strand, within DvMF_1891 at 2328.146 kb on - strand, within DvMF_1891
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Fusidic 0.03125 mg/ml remove 2,325,294 + -0.6 2,325,398 - DvMF_1889 0.12 -1.5 2,325,567 + DvMF_1889 0.47 -3.5 2,325,587 - DvMF_1889 0.51 -0.4 2,325,646 - DvMF_1889 0.63 -0.7 2,325,819 + -0.2 2,325,882 + -0.0 2,325,907 - +2.9 2,326,223 + -0.4 2,326,231 - -1.4 2,326,231 - -0.6 2,326,233 - -0.3 2,326,292 - -2.8 2,326,459 - DvMF_1890 0.20 -1.5 2,326,506 + DvMF_1890 0.25 -0.2 2,326,514 - DvMF_1890 0.25 -0.3 2,326,649 + DvMF_1890 0.38 -0.3 2,326,787 - DvMF_1890 0.51 -1.3 2,326,834 - DvMF_1890 0.55 -0.2 2,326,876 + DvMF_1890 0.59 -0.3 2,327,023 + DvMF_1890 0.73 -0.7 2,327,056 + DvMF_1890 0.76 -0.0 2,327,160 + DvMF_1890 0.85 -0.4 2,327,174 + DvMF_1890 0.87 +1.0 2,327,196 + DvMF_1890 0.89 -0.0 2,327,204 - DvMF_1890 0.90 -0.9 2,327,255 + -0.3 2,327,335 - -2.8 2,327,405 - -0.9 2,327,515 - +1.3 2,327,552 - -1.0 2,327,703 - -0.2 2,327,749 - -1.5 2,327,749 - +0.8 2,327,798 - -0.3 2,327,798 - -0.1 2,327,967 - DvMF_1891 0.22 -0.6 2,327,980 - DvMF_1891 0.23 -1.0 2,328,146 - DvMF_1891 0.37 +1.2
Or see this region's nucleotide sequence