Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1890

Experiment: MoYLS4 with Fusidic 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1888 and DvMF_1889 are separated by 8 nucleotidesDvMF_1889 and DvMF_1890 are separated by 418 nucleotidesDvMF_1890 and DvMF_1891 are separated by 389 nucleotides DvMF_1888: DvMF_1888 - DNA-3-methyladenine glycosylase I (RefSeq), at 2,324,731 to 2,325,333 _1888 DvMF_1889: DvMF_1889 - hypothetical protein (RefSeq), at 2,325,342 to 2,325,821 _1889 DvMF_1890: DvMF_1890 - iron-containing alcohol dehydrogenase (RefSeq), at 2,326,240 to 2,327,316 _1890 DvMF_1891: DvMF_1891 - Glutamine--scyllo-inositol transaminase (RefSeq), at 2,327,706 to 2,328,887 _1891 Position (kb) 2326 2327 2328Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2325.294 kb on + strandat 2325.398 kb on - strand, within DvMF_1889at 2325.567 kb on + strand, within DvMF_1889at 2325.587 kb on - strand, within DvMF_1889at 2325.646 kb on - strand, within DvMF_1889at 2325.819 kb on + strandat 2325.882 kb on + strandat 2325.907 kb on - strandat 2326.223 kb on + strandat 2326.231 kb on - strandat 2326.231 kb on - strandat 2326.233 kb on - strandat 2326.292 kb on - strandat 2326.459 kb on - strand, within DvMF_1890at 2326.506 kb on + strand, within DvMF_1890at 2326.514 kb on - strand, within DvMF_1890at 2326.649 kb on + strand, within DvMF_1890at 2326.787 kb on - strand, within DvMF_1890at 2326.834 kb on - strand, within DvMF_1890at 2326.876 kb on + strand, within DvMF_1890at 2327.023 kb on + strand, within DvMF_1890at 2327.056 kb on + strand, within DvMF_1890at 2327.160 kb on + strand, within DvMF_1890at 2327.174 kb on + strand, within DvMF_1890at 2327.196 kb on + strand, within DvMF_1890at 2327.204 kb on - strand, within DvMF_1890at 2327.255 kb on + strandat 2327.335 kb on - strandat 2327.405 kb on - strandat 2327.515 kb on - strandat 2327.552 kb on - strandat 2327.703 kb on - strandat 2327.749 kb on - strandat 2327.749 kb on - strandat 2327.798 kb on - strandat 2327.798 kb on - strandat 2327.967 kb on - strand, within DvMF_1891at 2327.980 kb on - strand, within DvMF_1891at 2328.146 kb on - strand, within DvMF_1891

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Fusidic 0.03125 mg/ml
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2,325,294 + -0.6
2,325,398 - DvMF_1889 0.12 -1.5
2,325,567 + DvMF_1889 0.47 -3.5
2,325,587 - DvMF_1889 0.51 -0.4
2,325,646 - DvMF_1889 0.63 -0.7
2,325,819 + -0.2
2,325,882 + -0.0
2,325,907 - +2.9
2,326,223 + -0.4
2,326,231 - -1.4
2,326,231 - -0.6
2,326,233 - -0.3
2,326,292 - -2.8
2,326,459 - DvMF_1890 0.20 -1.5
2,326,506 + DvMF_1890 0.25 -0.2
2,326,514 - DvMF_1890 0.25 -0.3
2,326,649 + DvMF_1890 0.38 -0.3
2,326,787 - DvMF_1890 0.51 -1.3
2,326,834 - DvMF_1890 0.55 -0.2
2,326,876 + DvMF_1890 0.59 -0.3
2,327,023 + DvMF_1890 0.73 -0.7
2,327,056 + DvMF_1890 0.76 -0.0
2,327,160 + DvMF_1890 0.85 -0.4
2,327,174 + DvMF_1890 0.87 +1.0
2,327,196 + DvMF_1890 0.89 -0.0
2,327,204 - DvMF_1890 0.90 -0.9
2,327,255 + -0.3
2,327,335 - -2.8
2,327,405 - -0.9
2,327,515 - +1.3
2,327,552 - -1.0
2,327,703 - -0.2
2,327,749 - -1.5
2,327,749 - +0.8
2,327,798 - -0.3
2,327,798 - -0.1
2,327,967 - DvMF_1891 0.22 -0.6
2,327,980 - DvMF_1891 0.23 -1.0
2,328,146 - DvMF_1891 0.37 +1.2

Or see this region's nucleotide sequence