Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1884

Experiment: MoYLS4 with Fusidic 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_R0051 and DvMF_1884 are separated by 448 nucleotidesDvMF_1884 and DvMF_1885 are separated by 276 nucleotides DvMF_R0051: DvMF_R0051 - tRNA-Thr (RefSeq), at 2,320,669 to 2,320,744 _R0051 DvMF_1884: DvMF_1884 - type IV pilus assembly PilZ (RefSeq), at 2,321,193 to 2,321,537 _1884 DvMF_1885: DvMF_1885 - hypothetical protein (RefSeq), at 2,321,814 to 2,322,383 _1885 Position (kb) 2321 2322Strain fitness (log2 ratio) -1 0 1at 2320.618 kb on + strandat 2320.729 kb on - strand, within DvMF_R0051at 2320.729 kb on - strand, within DvMF_R0051at 2320.975 kb on + strandat 2321.294 kb on - strand, within DvMF_1884at 2321.358 kb on + strand, within DvMF_1884at 2321.358 kb on + strand, within DvMF_1884at 2321.726 kb on - strandat 2322.093 kb on + strand, within DvMF_1885at 2322.184 kb on - strand, within DvMF_1885at 2322.227 kb on - strand, within DvMF_1885at 2322.534 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Fusidic 0.03125 mg/ml
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2,320,618 + -0.0
2,320,729 - DvMF_R0051 0.79 +1.2
2,320,729 - DvMF_R0051 0.79 -1.1
2,320,975 + -0.9
2,321,294 - DvMF_1884 0.29 +0.6
2,321,358 + DvMF_1884 0.48 -0.3
2,321,358 + DvMF_1884 0.48 -0.7
2,321,726 - -0.6
2,322,093 + DvMF_1885 0.49 -0.5
2,322,184 - DvMF_1885 0.65 -0.2
2,322,227 - DvMF_1885 0.72 -0.6
2,322,534 + -0.2

Or see this region's nucleotide sequence