Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1851

Experiment: MoYLS4 with Fusidic 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1850 and DvMF_1851 overlap by 4 nucleotidesDvMF_1851 and DvMF_1852 are separated by 274 nucleotides DvMF_1850: DvMF_1850 - Capsule polysaccharide biosynthesis protein (RefSeq), at 2,262,005 to 2,263,510 _1850 DvMF_1851: DvMF_1851 - Methyltransferase type 11 (RefSeq), at 2,263,507 to 2,264,217 _1851 DvMF_1852: DvMF_1852 - glycosyl transferase family 2 (RefSeq), at 2,264,492 to 2,266,969 _1852 Position (kb) 2263 2264 2265Strain fitness (log2 ratio) -3 -2 -1 0 1at 2262.555 kb on + strand, within DvMF_1850at 2262.661 kb on - strand, within DvMF_1850at 2262.949 kb on - strand, within DvMF_1850at 2263.092 kb on + strand, within DvMF_1850at 2263.100 kb on - strand, within DvMF_1850at 2263.331 kb on + strand, within DvMF_1850at 2263.339 kb on - strand, within DvMF_1850at 2263.381 kb on + strandat 2263.381 kb on + strandat 2263.440 kb on + strandat 2263.448 kb on - strandat 2263.461 kb on + strandat 2263.461 kb on - strandat 2263.843 kb on + strand, within DvMF_1851at 2263.921 kb on + strand, within DvMF_1851at 2264.091 kb on + strand, within DvMF_1851at 2264.158 kb on + strandat 2264.163 kb on + strandat 2264.428 kb on + strandat 2264.448 kb on + strandat 2264.477 kb on - strandat 2264.511 kb on - strandat 2264.570 kb on + strandat 2264.743 kb on + strand, within DvMF_1852at 2264.743 kb on + strand, within DvMF_1852at 2264.743 kb on + strand, within DvMF_1852at 2264.826 kb on - strand, within DvMF_1852at 2264.994 kb on - strand, within DvMF_1852at 2265.123 kb on - strand, within DvMF_1852

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Fusidic 0.03125 mg/ml
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2,262,555 + DvMF_1850 0.37 +0.0
2,262,661 - DvMF_1850 0.44 +0.2
2,262,949 - DvMF_1850 0.63 -0.5
2,263,092 + DvMF_1850 0.72 -0.0
2,263,100 - DvMF_1850 0.73 -0.1
2,263,331 + DvMF_1850 0.88 -0.1
2,263,339 - DvMF_1850 0.89 -0.4
2,263,381 + -0.4
2,263,381 + +0.4
2,263,440 + -0.8
2,263,448 - -0.6
2,263,461 + -0.9
2,263,461 - -1.0
2,263,843 + DvMF_1851 0.47 +0.2
2,263,921 + DvMF_1851 0.58 -2.9
2,264,091 + DvMF_1851 0.82 +0.2
2,264,158 + -1.1
2,264,163 + -0.4
2,264,428 + -0.0
2,264,448 + -0.0
2,264,477 - +0.5
2,264,511 - -1.0
2,264,570 + -0.2
2,264,743 + DvMF_1852 0.10 -0.0
2,264,743 + DvMF_1852 0.10 -0.5
2,264,743 + DvMF_1852 0.10 -0.3
2,264,826 - DvMF_1852 0.13 -0.8
2,264,994 - DvMF_1852 0.20 -0.5
2,265,123 - DvMF_1852 0.25 -0.7

Or see this region's nucleotide sequence