Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1837

Experiment: MoYLS4 with Fusidic 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1836 and DvMF_1837 overlap by 4 nucleotidesDvMF_1837 and DvMF_1838 overlap by 8 nucleotides DvMF_1836: DvMF_1836 - methyltransferase FkbM family (RefSeq), at 2,241,306 to 2,246,327 _1836 DvMF_1837: DvMF_1837 - glycosyl transferase family 2 (RefSeq), at 2,246,324 to 2,247,376 _1837 DvMF_1838: DvMF_1838 - Radical SAM domain protein (RefSeq), at 2,247,369 to 2,248,844 _1838 Position (kb) 2246 2247 2248Strain fitness (log2 ratio) -2 -1 0 1 2at 2245.372 kb on - strand, within DvMF_1836at 2245.626 kb on + strand, within DvMF_1836at 2245.626 kb on + strand, within DvMF_1836at 2245.626 kb on + strand, within DvMF_1836at 2245.626 kb on + strand, within DvMF_1836at 2245.626 kb on + strand, within DvMF_1836at 2245.626 kb on + strand, within DvMF_1836at 2245.634 kb on - strand, within DvMF_1836at 2245.653 kb on - strand, within DvMF_1836at 2245.705 kb on - strand, within DvMF_1836at 2245.727 kb on + strand, within DvMF_1836at 2245.786 kb on - strand, within DvMF_1836at 2245.786 kb on - strand, within DvMF_1836at 2245.864 kb on - strandat 2245.888 kb on + strandat 2246.014 kb on - strandat 2246.053 kb on + strandat 2246.216 kb on + strandat 2246.321 kb on + strandat 2246.341 kb on - strandat 2246.341 kb on - strandat 2246.368 kb on + strandat 2246.381 kb on - strandat 2246.388 kb on + strandat 2246.445 kb on + strand, within DvMF_1837at 2246.687 kb on - strand, within DvMF_1837at 2247.278 kb on + strandat 2247.311 kb on + strandat 2247.652 kb on - strand, within DvMF_1838at 2247.667 kb on + strand, within DvMF_1838at 2247.779 kb on + strand, within DvMF_1838at 2247.804 kb on - strand, within DvMF_1838at 2247.825 kb on - strand, within DvMF_1838at 2247.863 kb on + strand, within DvMF_1838at 2247.871 kb on - strand, within DvMF_1838at 2247.916 kb on - strand, within DvMF_1838at 2248.023 kb on + strand, within DvMF_1838at 2248.144 kb on + strand, within DvMF_1838at 2248.152 kb on - strand, within DvMF_1838at 2248.157 kb on - strand, within DvMF_1838at 2248.235 kb on - strand, within DvMF_1838at 2248.274 kb on + strand, within DvMF_1838at 2248.302 kb on + strand, within DvMF_1838at 2248.341 kb on + strand, within DvMF_1838

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Fusidic 0.03125 mg/ml
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2,245,372 - DvMF_1836 0.81 +2.6
2,245,626 + DvMF_1836 0.86 -0.9
2,245,626 + DvMF_1836 0.86 -1.6
2,245,626 + DvMF_1836 0.86 -0.8
2,245,626 + DvMF_1836 0.86 -0.4
2,245,626 + DvMF_1836 0.86 -0.4
2,245,626 + DvMF_1836 0.86 +2.3
2,245,634 - DvMF_1836 0.86 +0.1
2,245,653 - DvMF_1836 0.87 -0.6
2,245,705 - DvMF_1836 0.88 -1.0
2,245,727 + DvMF_1836 0.88 +2.3
2,245,786 - DvMF_1836 0.89 -1.4
2,245,786 - DvMF_1836 0.89 -0.7
2,245,864 - -0.7
2,245,888 + -1.2
2,246,014 - -0.3
2,246,053 + -0.1
2,246,216 + +0.2
2,246,321 + -0.2
2,246,341 - -0.9
2,246,341 - -0.2
2,246,368 + -0.3
2,246,381 - -0.5
2,246,388 + -1.0
2,246,445 + DvMF_1837 0.11 -1.4
2,246,687 - DvMF_1837 0.34 -2.2
2,247,278 + -0.7
2,247,311 + -0.6
2,247,652 - DvMF_1838 0.19 -0.5
2,247,667 + DvMF_1838 0.20 -0.3
2,247,779 + DvMF_1838 0.28 -1.1
2,247,804 - DvMF_1838 0.29 -0.8
2,247,825 - DvMF_1838 0.31 +0.0
2,247,863 + DvMF_1838 0.33 -2.1
2,247,871 - DvMF_1838 0.34 -0.3
2,247,916 - DvMF_1838 0.37 -0.4
2,248,023 + DvMF_1838 0.44 -1.6
2,248,144 + DvMF_1838 0.53 -0.6
2,248,152 - DvMF_1838 0.53 -0.9
2,248,157 - DvMF_1838 0.53 -0.1
2,248,235 - DvMF_1838 0.59 -0.2
2,248,274 + DvMF_1838 0.61 -1.2
2,248,302 + DvMF_1838 0.63 -0.1
2,248,341 + DvMF_1838 0.66 -0.4

Or see this region's nucleotide sequence