Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1485

Experiment: MoYLS4 with Fusidic 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1484 and DvMF_1485 are separated by 303 nucleotidesDvMF_1485 and DvMF_1486 are separated by 138 nucleotides DvMF_1484: DvMF_1484 - Nitrate reductase (RefSeq), at 1,818,308 to 1,820,527 _1484 DvMF_1485: DvMF_1485 - glutaminyl-tRNA synthetase (RefSeq), at 1,820,831 to 1,822,540 _1485 DvMF_1486: DvMF_1486 - GTPase EngC (RefSeq), at 1,822,679 to 1,823,794 _1486 Position (kb) 1820 1821 1822 1823Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1819.870 kb on - strand, within DvMF_1484at 1819.897 kb on - strand, within DvMF_1484at 1819.990 kb on + strand, within DvMF_1484at 1820.021 kb on - strand, within DvMF_1484at 1820.123 kb on - strand, within DvMF_1484at 1820.150 kb on + strand, within DvMF_1484at 1820.158 kb on - strand, within DvMF_1484at 1820.247 kb on + strand, within DvMF_1484at 1820.247 kb on + strand, within DvMF_1484at 1820.449 kb on + strandat 1820.586 kb on - strandat 1820.703 kb on - strandat 1820.747 kb on + strandat 1822.733 kb on - strandat 1822.838 kb on + strand, within DvMF_1486at 1823.065 kb on + strand, within DvMF_1486at 1823.226 kb on - strand, within DvMF_1486at 1823.418 kb on + strand, within DvMF_1486at 1823.485 kb on + strand, within DvMF_1486at 1823.505 kb on + strand, within DvMF_1486at 1823.521 kb on - strand, within DvMF_1486

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Fusidic 0.03125 mg/ml
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1,819,870 - DvMF_1484 0.70 +0.0
1,819,897 - DvMF_1484 0.72 -0.5
1,819,990 + DvMF_1484 0.76 -0.6
1,820,021 - DvMF_1484 0.77 -0.4
1,820,123 - DvMF_1484 0.82 -0.7
1,820,150 + DvMF_1484 0.83 -1.1
1,820,158 - DvMF_1484 0.83 -0.7
1,820,247 + DvMF_1484 0.87 -1.0
1,820,247 + DvMF_1484 0.87 -0.4
1,820,449 + -3.2
1,820,586 - -1.3
1,820,703 - -0.6
1,820,747 + +0.1
1,822,733 - +1.0
1,822,838 + DvMF_1486 0.14 -0.6
1,823,065 + DvMF_1486 0.35 -0.9
1,823,226 - DvMF_1486 0.49 -0.0
1,823,418 + DvMF_1486 0.66 +2.3
1,823,485 + DvMF_1486 0.72 -1.3
1,823,505 + DvMF_1486 0.74 -1.7
1,823,521 - DvMF_1486 0.75 -0.2

Or see this region's nucleotide sequence