Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1409

Experiment: MoYLS4 with Fusidic 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1408 and DvMF_1409 are separated by 253 nucleotidesDvMF_1409 and DvMF_1410 are separated by 345 nucleotides DvMF_1408: DvMF_1408 - chorismate synthase (RefSeq), at 1,721,788 to 1,722,849 _1408 DvMF_1409: DvMF_1409 - UspA domain protein (RefSeq), at 1,723,103 to 1,723,525 _1409 DvMF_1410: DvMF_1410 - Shikimate kinase (RefSeq), at 1,723,871 to 1,724,404 _1410 Position (kb) 1723 1724Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1723.031 kb on + strandat 1723.053 kb on + strandat 1723.053 kb on + strandat 1723.130 kb on - strandat 1723.389 kb on - strand, within DvMF_1409at 1723.426 kb on + strand, within DvMF_1409at 1723.846 kb on + strandat 1724.418 kb on - strandat 1724.498 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Fusidic 0.03125 mg/ml
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1,723,031 + -1.0
1,723,053 + -3.7
1,723,053 + -0.5
1,723,130 - -4.1
1,723,389 - DvMF_1409 0.68 -0.9
1,723,426 + DvMF_1409 0.76 +0.2
1,723,846 + +1.4
1,724,418 - -0.8
1,724,498 + -0.7

Or see this region's nucleotide sequence