Experiment: MoYLS4 with Fusidic 0.03125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1054 and DvMF_1055 are separated by 554 nucleotides DvMF_1055 and DvMF_1056 are separated by 161 nucleotides DvMF_1056 and DvMF_1057 are separated by 268 nucleotides
DvMF_1054: DvMF_1054 - protein of unknown function DUF1499 (RefSeq), at 1,290,974 to 1,291,501
_1054
DvMF_1055: DvMF_1055 - Mg2 transporter protein CorA family protein (RefSeq), at 1,292,056 to 1,292,988
_1055
DvMF_1056: DvMF_1056 - no description, at 1,293,150 to 1,293,528
_1056
DvMF_1057: DvMF_1057 - methyl-accepting chemotaxis sensory transducer with Cache sensor (RefSeq), at 1,293,797 to 1,295,701
_1057
Position (kb)
1292
1293 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1291.152 kb on + strand, within DvMF_1054 at 1291.777 kb on + strand at 1291.956 kb on - strand at 1292.319 kb on + strand, within DvMF_1055 at 1292.327 kb on - strand, within DvMF_1055 at 1292.557 kb on + strand, within DvMF_1055 at 1292.877 kb on + strand, within DvMF_1055 at 1293.089 kb on + strand at 1293.358 kb on - strand, within DvMF_1056 at 1293.468 kb on - strand, within DvMF_1056 at 1293.590 kb on - strand at 1293.778 kb on + strand at 1293.829 kb on - strand at 1293.844 kb on + strand at 1293.880 kb on - strand at 1293.890 kb on - strand at 1293.972 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Fusidic 0.03125 mg/ml remove 1,291,152 + DvMF_1054 0.34 -4.0 1,291,777 + +0.1 1,291,956 - -0.6 1,292,319 + DvMF_1055 0.28 -3.9 1,292,327 - DvMF_1055 0.29 -1.5 1,292,557 + DvMF_1055 0.54 -1.3 1,292,877 + DvMF_1055 0.88 -0.3 1,293,089 + -0.1 1,293,358 - DvMF_1056 0.55 -0.0 1,293,468 - DvMF_1056 0.84 -1.3 1,293,590 - -0.6 1,293,778 + +0.6 1,293,829 - -0.8 1,293,844 + -0.9 1,293,880 - -1.2 1,293,890 - -0.5 1,293,972 + -1.4
Or see this region's nucleotide sequence