Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0829

Experiment: MoYLS4 with Fusidic 0.03125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0827 and DvMF_0828 are separated by 290 nucleotidesDvMF_0828 and DvMF_0829 are separated by 221 nucleotidesDvMF_0829 and DvMF_0830 are separated by 430 nucleotides DvMF_0827: DvMF_0827 - Tetratricopeptide TPR_2 repeat protein (RefSeq), at 999,431 to 1,000,003 _0827 DvMF_0828: DvMF_0828 - hypothetical protein (RefSeq), at 1,000,294 to 1,000,659 _0828 DvMF_0829: DvMF_0829 - alpha/beta hydrolase fold protein (RefSeq), at 1,000,881 to 1,001,873 _0829 DvMF_0830: DvMF_0830 - HI0933 family protein (RefSeq), at 1,002,304 to 1,003,563 _0830 Position (kb) 1000 1001 1002Strain fitness (log2 ratio) -1 0 1at 999.954 kb on - strandat 1000.103 kb on - strandat 1000.108 kb on - strandat 1000.610 kb on + strand, within DvMF_0828at 1000.658 kb on + strandat 1001.630 kb on - strand, within DvMF_0829at 1001.636 kb on - strand, within DvMF_0829at 1002.078 kb on - strandat 1002.285 kb on + strandat 1002.754 kb on - strand, within DvMF_0830

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Fusidic 0.03125 mg/ml
remove
999,954 - -1.2
1,000,103 - -0.6
1,000,108 - -0.6
1,000,610 + DvMF_0828 0.86 -0.4
1,000,658 + -0.3
1,001,630 - DvMF_0829 0.75 +0.2
1,001,636 - DvMF_0829 0.76 +0.2
1,002,078 - -0.3
1,002,285 + -0.6
1,002,754 - DvMF_0830 0.36 -0.6

Or see this region's nucleotide sequence