Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0722

Experiment: MoYLS4 with Fusidic 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0721 and DvMF_0722 are separated by 942 nucleotidesDvMF_0722 and DvMF_0723 are separated by 2 nucleotidesDvMF_0723 and DvMF_0724 overlap by 1 nucleotides DvMF_0721: DvMF_0721 - Mor transcription activator domain protein (RefSeq), at 871,425 to 871,895 _0721 DvMF_0722: DvMF_0722 - phage-related membrane protein (RefSeq), at 872,838 to 873,209 _0722 DvMF_0723: DvMF_0723 - Lytic transglycosylase catalytic (RefSeq), at 873,212 to 874,000 _0723 DvMF_0724: DvMF_0724 - hypothetical protein (RefSeq), at 874,000 to 874,695 _0724 Position (kb) 872 873 874Strain fitness (log2 ratio) -3 -2 -1 0 1at 872.070 kb on + strandat 872.734 kb on + strandat 873.242 kb on - strandat 873.362 kb on - strand, within DvMF_0723at 873.473 kb on + strand, within DvMF_0723at 873.476 kb on - strand, within DvMF_0723at 873.478 kb on + strand, within DvMF_0723at 873.594 kb on + strand, within DvMF_0723at 873.667 kb on + strand, within DvMF_0723at 873.714 kb on + strand, within DvMF_0723at 873.807 kb on + strand, within DvMF_0723at 874.183 kb on + strand, within DvMF_0724

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Fusidic 0.03125 mg/ml
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872,070 + -0.5
872,734 + -0.5
873,242 - -0.7
873,362 - DvMF_0723 0.19 -0.4
873,473 + DvMF_0723 0.33 +0.5
873,476 - DvMF_0723 0.33 +0.6
873,478 + DvMF_0723 0.34 -0.5
873,594 + DvMF_0723 0.48 -3.2
873,667 + DvMF_0723 0.58 -0.1
873,714 + DvMF_0723 0.64 -0.2
873,807 + DvMF_0723 0.75 +0.5
874,183 + DvMF_0724 0.26 +0.2

Or see this region's nucleotide sequence