Experiment: MoYLS4 with Fusidic 0.03125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0038 and DvMF_0039 overlap by 4 nucleotides DvMF_0039 and DvMF_0040 overlap by 1 nucleotides DvMF_0040 and DvMF_0041 are separated by 143 nucleotides DvMF_0041 and DvMF_0042 are separated by 86 nucleotides
DvMF_0038: DvMF_0038 - protein of unknown function DUF140 (RefSeq), at 50,269 to 51,414
_0038
DvMF_0039: DvMF_0039 - ABC transporter related (RefSeq), at 51,411 to 52,319
_0039
DvMF_0040: DvMF_0040 - Mammalian cell entry related domain protein (RefSeq), at 52,319 to 53,302
_0040
DvMF_0041: DvMF_0041 - protein of unknown function DUF330 (RefSeq), at 53,446 to 54,039
_0041
DvMF_0042: DvMF_0042 - diguanylate cyclase (RefSeq), at 54,126 to 55,274
_0042
Position (kb) 52
53
54 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 51.367 kb on - strand at 51.431 kb on - strand at 51.593 kb on + strand, within DvMF_0039 at 51.610 kb on + strand, within DvMF_0039 at 51.636 kb on + strand, within DvMF_0039 at 51.860 kb on + strand, within DvMF_0039 at 51.860 kb on + strand, within DvMF_0039 at 51.868 kb on - strand, within DvMF_0039 at 52.289 kb on - strand at 52.333 kb on + strand at 52.348 kb on - strand at 52.454 kb on - strand, within DvMF_0040 at 52.829 kb on + strand, within DvMF_0040 at 52.829 kb on + strand, within DvMF_0040 at 52.837 kb on - strand, within DvMF_0040 at 52.837 kb on - strand, within DvMF_0040 at 52.860 kb on - strand, within DvMF_0040 at 52.888 kb on + strand, within DvMF_0040 at 53.238 kb on + strand at 53.289 kb on - strand at 53.340 kb on - strand at 53.396 kb on - strand at 53.764 kb on + strand, within DvMF_0041 at 53.772 kb on - strand, within DvMF_0041 at 53.886 kb on - strand, within DvMF_0041 at 54.033 kb on + strand at 54.125 kb on - strand at 54.236 kb on + strand at 54.268 kb on + strand, within DvMF_0042
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Fusidic 0.03125 mg/ml remove 51,367 - -0.6 51,431 - +0.7 51,593 + DvMF_0039 0.20 -0.6 51,610 + DvMF_0039 0.22 -0.2 51,636 + DvMF_0039 0.25 -4.1 51,860 + DvMF_0039 0.49 -0.8 51,860 + DvMF_0039 0.49 +1.3 51,868 - DvMF_0039 0.50 +0.3 52,289 - -1.2 52,333 + +0.0 52,348 - +2.3 52,454 - DvMF_0040 0.14 -0.2 52,829 + DvMF_0040 0.52 +0.4 52,829 + DvMF_0040 0.52 -0.1 52,837 - DvMF_0040 0.53 -0.4 52,837 - DvMF_0040 0.53 +0.4 52,860 - DvMF_0040 0.55 +0.2 52,888 + DvMF_0040 0.58 -1.3 53,238 + -1.0 53,289 - -0.2 53,340 - +0.6 53,396 - -1.5 53,764 + DvMF_0041 0.54 -0.3 53,772 - DvMF_0041 0.55 -0.0 53,886 - DvMF_0041 0.74 -0.5 54,033 + -1.2 54,125 - -0.9 54,236 + -0.1 54,268 + DvMF_0042 0.12 -0.7
Or see this region's nucleotide sequence