Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4109 and engB are separated by 977 nucleotides engB and Shewana3_4111 are separated by 169 nucleotides Shewana3_4111 and Shewana3_4112 are separated by 108 nucleotides
Shewana3_4109: Shewana3_4109 - DNA polymerase I (RefSeq), at 4,931,315 to 4,934,083
_4109
Shewana3_4110: engB - ribosome biogenesis GTP-binding protein YsxC (RefSeq), at 4,935,061 to 4,935,720
engB
Shewana3_4111: Shewana3_4111 - cytochrome c, class I (RefSeq), at 4,935,890 to 4,936,513
_4111
Shewana3_4112: Shewana3_4112 - hypothetical protein (RefSeq), at 4,936,622 to 4,936,915
_4112
Position (kb)
4935
4936 Strain fitness (log2 ratio)
-2
-1
0
1 at 4934.223 kb on - strand at 4934.363 kb on + strand at 4934.373 kb on + strand at 4934.393 kb on - strand at 4934.639 kb on + strand at 4934.663 kb on + strand at 4935.108 kb on + strand at 4935.108 kb on - strand at 4935.805 kb on - strand at 4935.844 kb on + strand at 4935.853 kb on + strand at 4935.858 kb on + strand at 4935.942 kb on - strand at 4936.568 kb on + strand at 4936.637 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,934,223 - -0.1 4,934,363 + +0.1 4,934,373 + -0.6 4,934,393 - +0.2 4,934,639 + +0.5 4,934,663 + +1.0 4,935,108 + -1.1 4,935,108 - +0.6 4,935,805 - +0.3 4,935,844 + +0.5 4,935,853 + -1.3 4,935,858 + +0.3 4,935,942 - -0.8 4,936,568 + -2.0 4,936,637 - +0.4
Or see this region's nucleotide sequence