Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4109
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
4,930,347 | + | Shewana3_4108 | 0.11 | -1.7 | |
4,930,397 | - | Shewana3_4108 | 0.19 | +0.2 | |
4,930,397 | - | Shewana3_4108 | 0.19 | +0.2 | |
4,930,404 | - | Shewana3_4108 | 0.20 | +0.3 | |
4,930,414 | - | Shewana3_4108 | 0.21 | -0.2 | |
4,930,443 | - | Shewana3_4108 | 0.26 | +0.5 | |
4,930,477 | - | Shewana3_4108 | 0.31 | +0.2 | |
4,930,652 | + | Shewana3_4108 | 0.58 | -0.2 | |
4,930,652 | + | Shewana3_4108 | 0.58 | -0.4 | |
4,930,653 | + | Shewana3_4108 | 0.58 | -1.2 | |
4,930,722 | - | Shewana3_4108 | 0.68 | +0.3 | |
4,931,219 | + | +0.1 | |||
4,932,801 | + | Shewana3_4109 | 0.54 | -2.0 | |
4,934,223 | - | -0.1 | |||
4,934,363 | + | +0.1 | |||
4,934,373 | + | -0.6 | |||
4,934,393 | - | +0.2 | |||
4,934,639 | + | +0.5 | |||
4,934,663 | + | +1.0 |
Or see this region's nucleotide sequence