Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3889

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3887 and Shewana3_3888 overlap by 1 nucleotidesShewana3_3888 and Shewana3_3889 are separated by 262 nucleotidesShewana3_3889 and Shewana3_3890 overlap by 1 nucleotidesShewana3_3890 and Shewana3_3891 are separated by 24 nucleotides Shewana3_3887: Shewana3_3887 - phosphoglycolate phosphatase (RefSeq), at 4,667,106 to 4,667,789 _3887 Shewana3_3888: Shewana3_3888 - ribulose-5-phosphate 3-epimerase (RefSeq), at 4,667,789 to 4,668,466 _3888 Shewana3_3889: Shewana3_3889 - hypothetical protein (RefSeq), at 4,668,729 to 4,669,094 _3889 Shewana3_3890: Shewana3_3890 - hypothetical protein (RefSeq), at 4,669,094 to 4,669,279 _3890 Shewana3_3891: Shewana3_3891 - DNA adenine methylase (RefSeq), at 4,669,304 to 4,670,143 _3891 Position (kb) 4668 4669 4670Strain fitness (log2 ratio) -2 -1 0 1at 4667.764 kb on - strandat 4668.822 kb on + strand, within Shewana3_3889at 4668.836 kb on - strand, within Shewana3_3889at 4668.945 kb on - strand, within Shewana3_3889at 4668.955 kb on - strand, within Shewana3_3889at 4669.123 kb on - strand, within Shewana3_3890at 4669.234 kb on - strand, within Shewana3_3890at 4669.253 kb on - strand, within Shewana3_3890at 4670.066 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,667,764 - +0.2
4,668,822 + Shewana3_3889 0.25 -1.5
4,668,836 - Shewana3_3889 0.29 -0.2
4,668,945 - Shewana3_3889 0.59 -1.8
4,668,955 - Shewana3_3889 0.62 -1.4
4,669,123 - Shewana3_3890 0.16 -0.6
4,669,234 - Shewana3_3890 0.75 -0.7
4,669,253 - Shewana3_3890 0.85 -1.0
4,670,066 - -0.7

Or see this region's nucleotide sequence