Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3887

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3886 and Shewana3_3887 are separated by 36 nucleotidesShewana3_3887 and Shewana3_3888 overlap by 1 nucleotidesShewana3_3888 and Shewana3_3889 are separated by 262 nucleotides Shewana3_3886: Shewana3_3886 - tryptophanyl-tRNA synthetase (RefSeq), at 4,666,071 to 4,667,069 _3886 Shewana3_3887: Shewana3_3887 - phosphoglycolate phosphatase (RefSeq), at 4,667,106 to 4,667,789 _3887 Shewana3_3888: Shewana3_3888 - ribulose-5-phosphate 3-epimerase (RefSeq), at 4,667,789 to 4,668,466 _3888 Shewana3_3889: Shewana3_3889 - hypothetical protein (RefSeq), at 4,668,729 to 4,669,094 _3889 Position (kb) 4667 4668Strain fitness (log2 ratio) -1 0 1at 4667.131 kb on - strandat 4667.336 kb on + strand, within Shewana3_3887at 4667.372 kb on + strand, within Shewana3_3887at 4667.464 kb on - strand, within Shewana3_3887at 4667.520 kb on - strand, within Shewana3_3887at 4667.653 kb on + strand, within Shewana3_3887at 4667.764 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,667,131 - -0.1
4,667,336 + Shewana3_3887 0.34 -1.7
4,667,372 + Shewana3_3887 0.39 -1.7
4,667,464 - Shewana3_3887 0.52 -0.4
4,667,520 - Shewana3_3887 0.61 -0.1
4,667,653 + Shewana3_3887 0.80 -1.0
4,667,764 - +0.2

Or see this region's nucleotide sequence