Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3701
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
4,441,723 | + | hslU | Shewana3_3700 | 0.50 | +0.4 |
4,441,731 | - | hslU | Shewana3_3700 | 0.50 | +0.3 |
4,441,885 | + | hslU | Shewana3_3700 | 0.62 | -0.7 |
4,441,904 | + | hslU | Shewana3_3700 | 0.63 | +0.2 |
4,441,922 | - | hslU | Shewana3_3700 | 0.64 | +1.9 |
4,442,281 | + | -0.3 | |||
4,442,388 | - | +0.3 | |||
4,442,472 | + | -0.4 | |||
4,442,474 | - | -0.7 | |||
4,442,480 | + | +1.3 | |||
4,442,480 | - | -2.1 | |||
4,442,480 | - | -0.2 | |||
4,442,635 | + | Shewana3_3701 | 0.22 | +1.3 | |
4,442,654 | - | Shewana3_3701 | 0.27 | +0.1 | |
4,442,708 | - | Shewana3_3701 | 0.41 | -0.0 | |
4,442,743 | + | Shewana3_3701 | 0.50 | +0.3 | |
4,442,797 | - | Shewana3_3701 | 0.64 | +0.4 | |
4,443,147 | + | -0.2 | |||
4,443,346 | + | -0.7 | |||
4,443,360 | - | -0.1 | |||
4,443,497 | + | Shewana3_3702 | 0.31 | -2.2 | |
4,443,561 | - | Shewana3_3702 | 0.42 | -0.8 | |
4,443,639 | + | Shewana3_3702 | 0.55 | +0.5 | |
4,443,647 | - | Shewana3_3702 | 0.57 | -1.3 | |
4,443,647 | - | Shewana3_3702 | 0.57 | -0.5 | |
4,443,698 | + | Shewana3_3702 | 0.65 | -0.1 | |
4,443,886 | - | +0.2 |
Or see this region's nucleotide sequence