Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3598 and Shewana3_3599 are separated by 132 nucleotides Shewana3_3599 and Shewana3_3600 are separated by 16 nucleotides Shewana3_3600 and Shewana3_3601 are separated by 8 nucleotides
Shewana3_3598: Shewana3_3598 - LysR family transcriptional regulator (RefSeq), at 4,321,829 to 4,322,710
_3598
Shewana3_3599: Shewana3_3599 - aldo/keto reductase (RefSeq), at 4,322,843 to 4,323,685
_3599
Shewana3_3600: Shewana3_3600 - HAD family hydrolase (RefSeq), at 4,323,702 to 4,324,322
_3600
Shewana3_3601: Shewana3_3601 - hypothetical protein (RefSeq), at 4,324,331 to 4,325,320
_3601
Position (kb) 4323
4324
4325 Strain fitness (log2 ratio) -2
-1
0
1 at 4322.977 kb on - strand, within Shewana3_3599 at 4323.034 kb on - strand, within Shewana3_3599 at 4323.044 kb on - strand, within Shewana3_3599 at 4323.487 kb on - strand, within Shewana3_3599 at 4323.964 kb on - strand, within Shewana3_3600 at 4324.421 kb on + strand at 4324.556 kb on - strand, within Shewana3_3601 at 4324.556 kb on - strand, within Shewana3_3601 at 4324.574 kb on - strand, within Shewana3_3601 at 4324.748 kb on + strand, within Shewana3_3601 at 4324.782 kb on + strand, within Shewana3_3601 at 4324.816 kb on + strand, within Shewana3_3601 at 4324.821 kb on + strand, within Shewana3_3601 at 4324.883 kb on + strand, within Shewana3_3601 at 4324.913 kb on - strand, within Shewana3_3601 at 4325.068 kb on + strand, within Shewana3_3601 at 4325.273 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,322,977 - Shewana3_3599 0.16 -0.5 4,323,034 - Shewana3_3599 0.23 -1.5 4,323,044 - Shewana3_3599 0.24 -0.5 4,323,487 - Shewana3_3599 0.76 -2.2 4,323,964 - Shewana3_3600 0.42 -1.0 4,324,421 + +0.5 4,324,556 - Shewana3_3601 0.23 +0.2 4,324,556 - Shewana3_3601 0.23 +0.3 4,324,574 - Shewana3_3601 0.25 -0.3 4,324,748 + Shewana3_3601 0.42 -1.4 4,324,782 + Shewana3_3601 0.46 +0.3 4,324,816 + Shewana3_3601 0.49 -0.6 4,324,821 + Shewana3_3601 0.49 +0.7 4,324,883 + Shewana3_3601 0.56 -1.5 4,324,913 - Shewana3_3601 0.59 +0.0 4,325,068 + Shewana3_3601 0.74 -0.9 4,325,273 + -0.6
Or see this region's nucleotide sequence