Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3586 and Shewana3_3587 overlap by 26 nucleotides Shewana3_3587 and Shewana3_3588 are separated by 186 nucleotides
Shewana3_3586: Shewana3_3586 - DNA-binding transcriptional regulator YidZ (RefSeq), at 4,304,294 to 4,305,259
_3586
Shewana3_3587: Shewana3_3587 - multidrug efflux system protein MdtL (RefSeq), at 4,305,234 to 4,306,424
_3587
Shewana3_3588: Shewana3_3588 - peptidase M16 domain-containing protein (RefSeq), at 4,306,611 to 4,309,442
_3588
Position (kb) 4305
4306
4307 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4304.238 kb on + strand at 4304.452 kb on - strand, within Shewana3_3586 at 4304.540 kb on - strand, within Shewana3_3586 at 4304.566 kb on - strand, within Shewana3_3586 at 4304.566 kb on - strand at 4304.596 kb on + strand, within Shewana3_3586 at 4304.724 kb on - strand, within Shewana3_3586 at 4304.988 kb on + strand, within Shewana3_3586 at 4304.994 kb on + strand, within Shewana3_3586 at 4305.000 kb on + strand, within Shewana3_3586 at 4305.177 kb on + strand at 4305.297 kb on - strand at 4305.410 kb on - strand, within Shewana3_3587 at 4305.549 kb on + strand, within Shewana3_3587 at 4305.667 kb on + strand, within Shewana3_3587 at 4305.718 kb on + strand, within Shewana3_3587 at 4305.718 kb on + strand, within Shewana3_3587 at 4305.726 kb on - strand, within Shewana3_3587 at 4305.726 kb on - strand, within Shewana3_3587 at 4305.760 kb on - strand, within Shewana3_3587 at 4305.760 kb on - strand, within Shewana3_3587 at 4305.760 kb on - strand, within Shewana3_3587 at 4305.762 kb on + strand, within Shewana3_3587 at 4305.787 kb on - strand, within Shewana3_3587 at 4305.891 kb on - strand, within Shewana3_3587 at 4306.015 kb on - strand, within Shewana3_3587 at 4306.024 kb on + strand, within Shewana3_3587 at 4306.051 kb on - strand, within Shewana3_3587 at 4306.202 kb on - strand, within Shewana3_3587 at 4306.202 kb on - strand, within Shewana3_3587 at 4306.209 kb on - strand, within Shewana3_3587 at 4306.310 kb on - strand at 4306.359 kb on + strand at 4306.367 kb on - strand at 4306.391 kb on - strand at 4306.394 kb on + strand at 4306.427 kb on + strand at 4306.435 kb on - strand at 4306.472 kb on + strand at 4306.472 kb on + strand at 4306.472 kb on + strand at 4306.480 kb on - strand at 4306.480 kb on - strand at 4306.573 kb on - strand at 4306.689 kb on + strand at 4306.832 kb on - strand at 4306.869 kb on + strand at 4306.879 kb on + strand at 4306.887 kb on - strand at 4306.887 kb on - strand at 4307.087 kb on - strand, within Shewana3_3588 at 4307.114 kb on - strand, within Shewana3_3588 at 4307.227 kb on - strand, within Shewana3_3588 at 4307.246 kb on + strand, within Shewana3_3588 at 4307.330 kb on - strand, within Shewana3_3588
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,304,238 + +0.2 4,304,452 - Shewana3_3586 0.16 -1.5 4,304,540 - Shewana3_3586 0.25 -1.1 4,304,566 - Shewana3_3586 0.28 -2.1 4,304,566 - -0.4 4,304,596 + Shewana3_3586 0.31 -1.7 4,304,724 - Shewana3_3586 0.45 -2.9 4,304,988 + Shewana3_3586 0.72 -2.8 4,304,994 + Shewana3_3586 0.72 -2.3 4,305,000 + Shewana3_3586 0.73 -1.1 4,305,177 + -0.1 4,305,297 - -0.7 4,305,410 - Shewana3_3587 0.15 -0.3 4,305,549 + Shewana3_3587 0.26 -1.4 4,305,667 + Shewana3_3587 0.36 -3.2 4,305,718 + Shewana3_3587 0.41 -0.4 4,305,718 + Shewana3_3587 0.41 -1.3 4,305,726 - Shewana3_3587 0.41 -0.1 4,305,726 - Shewana3_3587 0.41 +0.0 4,305,760 - Shewana3_3587 0.44 -0.2 4,305,760 - Shewana3_3587 0.44 +0.6 4,305,760 - Shewana3_3587 0.44 -0.0 4,305,762 + Shewana3_3587 0.44 -1.0 4,305,787 - Shewana3_3587 0.46 +0.2 4,305,891 - Shewana3_3587 0.55 -0.5 4,306,015 - Shewana3_3587 0.66 +0.6 4,306,024 + Shewana3_3587 0.66 -4.3 4,306,051 - Shewana3_3587 0.69 +0.3 4,306,202 - Shewana3_3587 0.81 -1.0 4,306,202 - Shewana3_3587 0.81 -0.3 4,306,209 - Shewana3_3587 0.82 +0.0 4,306,310 - -0.5 4,306,359 + -1.0 4,306,367 - -0.0 4,306,391 - +0.2 4,306,394 + +1.9 4,306,427 + +0.5 4,306,435 - -0.6 4,306,472 + -1.6 4,306,472 + +0.5 4,306,472 + -0.9 4,306,480 - -0.9 4,306,480 - -0.2 4,306,573 - -1.3 4,306,689 + -0.7 4,306,832 - -0.5 4,306,869 + -0.7 4,306,879 + -0.4 4,306,887 - -0.5 4,306,887 - +0.3 4,307,087 - Shewana3_3588 0.17 -0.2 4,307,114 - Shewana3_3588 0.18 +0.0 4,307,227 - Shewana3_3588 0.22 +0.1 4,307,246 + Shewana3_3588 0.22 -1.9 4,307,330 - Shewana3_3588 0.25 -0.1
Or see this region's nucleotide sequence