Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3535 and Shewana3_3536 are separated by 134 nucleotides Shewana3_3536 and Shewana3_3537 are separated by 111 nucleotides Shewana3_3537 and Shewana3_3538 are separated by 153 nucleotides
Shewana3_3535: Shewana3_3535 - hypothetical protein (RefSeq), at 4,234,507 to 4,235,316
_3535
Shewana3_3536: Shewana3_3536 - lysine exporter protein LysE/YggA (RefSeq), at 4,235,451 to 4,236,155
_3536
Shewana3_3537: Shewana3_3537 - AraC family transcriptional regulator (RefSeq), at 4,236,267 to 4,237,097
_3537
Shewana3_3538: Shewana3_3538 - hypothetical protein (RefSeq), at 4,237,251 to 4,237,997
_3538
Position (kb)
4236
4237
4238 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4235.411 kb on + strand at 4235.421 kb on - strand at 4235.432 kb on - strand at 4235.449 kb on + strand at 4235.457 kb on - strand at 4235.604 kb on - strand, within Shewana3_3536 at 4235.681 kb on - strand, within Shewana3_3536 at 4235.780 kb on + strand, within Shewana3_3536 at 4235.855 kb on - strand, within Shewana3_3536 at 4235.978 kb on - strand, within Shewana3_3536 at 4236.102 kb on + strand at 4236.435 kb on + strand, within Shewana3_3537 at 4236.444 kb on - strand, within Shewana3_3537 at 4236.494 kb on + strand, within Shewana3_3537 at 4236.494 kb on + strand, within Shewana3_3537 at 4236.502 kb on - strand, within Shewana3_3537 at 4236.597 kb on - strand, within Shewana3_3537 at 4236.684 kb on + strand, within Shewana3_3537 at 4236.793 kb on - strand, within Shewana3_3537 at 4237.026 kb on + strand at 4237.092 kb on + strand at 4237.112 kb on - strand at 4237.162 kb on - strand at 4237.372 kb on + strand, within Shewana3_3538 at 4237.456 kb on + strand, within Shewana3_3538 at 4237.459 kb on - strand, within Shewana3_3538 at 4237.551 kb on + strand, within Shewana3_3538 at 4237.566 kb on + strand, within Shewana3_3538 at 4237.566 kb on + strand, within Shewana3_3538 at 4237.566 kb on + strand, within Shewana3_3538 at 4237.566 kb on + strand, within Shewana3_3538 at 4237.566 kb on + strand, within Shewana3_3538 at 4237.574 kb on - strand, within Shewana3_3538 at 4237.625 kb on + strand, within Shewana3_3538 at 4237.679 kb on + strand, within Shewana3_3538 at 4237.687 kb on - strand, within Shewana3_3538 at 4237.736 kb on + strand, within Shewana3_3538 at 4237.862 kb on - strand, within Shewana3_3538 at 4237.877 kb on + strand, within Shewana3_3538 at 4237.885 kb on + strand, within Shewana3_3538 at 4237.935 kb on + strand at 4237.959 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,235,411 + -1.5 4,235,421 - -0.3 4,235,432 - +0.6 4,235,449 + -1.3 4,235,457 - +0.1 4,235,604 - Shewana3_3536 0.22 -0.6 4,235,681 - Shewana3_3536 0.33 +0.4 4,235,780 + Shewana3_3536 0.47 -0.3 4,235,855 - Shewana3_3536 0.57 +0.1 4,235,978 - Shewana3_3536 0.75 +0.1 4,236,102 + -1.4 4,236,435 + Shewana3_3537 0.20 -0.8 4,236,444 - Shewana3_3537 0.21 -0.6 4,236,494 + Shewana3_3537 0.27 -1.2 4,236,494 + Shewana3_3537 0.27 -0.3 4,236,502 - Shewana3_3537 0.28 +0.3 4,236,597 - Shewana3_3537 0.40 -2.7 4,236,684 + Shewana3_3537 0.50 -1.0 4,236,793 - Shewana3_3537 0.63 -0.0 4,237,026 + -1.4 4,237,092 + +0.5 4,237,112 - -0.6 4,237,162 - -0.8 4,237,372 + Shewana3_3538 0.16 -0.1 4,237,456 + Shewana3_3538 0.27 +0.1 4,237,459 - Shewana3_3538 0.28 +0.8 4,237,551 + Shewana3_3538 0.40 +0.0 4,237,566 + Shewana3_3538 0.42 +0.2 4,237,566 + Shewana3_3538 0.42 +1.8 4,237,566 + Shewana3_3538 0.42 +0.2 4,237,566 + Shewana3_3538 0.42 -0.9 4,237,566 + Shewana3_3538 0.42 +0.5 4,237,574 - Shewana3_3538 0.43 +0.7 4,237,625 + Shewana3_3538 0.50 +1.0 4,237,679 + Shewana3_3538 0.57 +0.1 4,237,687 - Shewana3_3538 0.58 +0.1 4,237,736 + Shewana3_3538 0.65 +0.5 4,237,862 - Shewana3_3538 0.82 +0.0 4,237,877 + Shewana3_3538 0.84 +0.5 4,237,885 + Shewana3_3538 0.85 +0.5 4,237,935 + +0.5 4,237,959 - -1.1
Or see this region's nucleotide sequence