Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3517 and Shewana3_3518 are separated by 218 nucleotides Shewana3_3518 and Shewana3_3519 are separated by 6 nucleotides Shewana3_3519 and Shewana3_3520 are separated by 71 nucleotides
Shewana3_3517: Shewana3_3517 - extracellular solute-binding protein (RefSeq), at 4,218,778 to 4,219,785
_3517
Shewana3_3518: Shewana3_3518 - hypothetical protein (RefSeq), at 4,220,004 to 4,220,426
_3518
Shewana3_3519: Shewana3_3519 - glutathione S-transferase domain-containing protein (RefSeq), at 4,220,433 to 4,221,029
_3519
Shewana3_3520: Shewana3_3520 - oxidoreductase FAD/NAD(P)-binding subunit (RefSeq), at 4,221,101 to 4,221,850
_3520
Position (kb)
4220
4221 Strain fitness (log2 ratio)
-2
-1
0
1 at 4219.132 kb on + strand, within Shewana3_3517 at 4219.186 kb on - strand, within Shewana3_3517 at 4219.186 kb on - strand, within Shewana3_3517 at 4219.253 kb on + strand, within Shewana3_3517 at 4219.308 kb on - strand, within Shewana3_3517 at 4219.319 kb on - strand, within Shewana3_3517 at 4219.377 kb on - strand, within Shewana3_3517 at 4219.426 kb on + strand, within Shewana3_3517 at 4219.581 kb on - strand, within Shewana3_3517 at 4220.050 kb on + strand, within Shewana3_3518 at 4220.050 kb on + strand, within Shewana3_3518 at 4220.567 kb on - strand, within Shewana3_3519 at 4220.576 kb on - strand, within Shewana3_3519 at 4220.612 kb on - strand, within Shewana3_3519 at 4220.659 kb on + strand, within Shewana3_3519 at 4220.724 kb on + strand, within Shewana3_3519 at 4220.902 kb on - strand, within Shewana3_3519 at 4220.995 kb on + strand at 4221.051 kb on - strand at 4221.186 kb on + strand, within Shewana3_3520 at 4221.274 kb on + strand, within Shewana3_3520 at 4221.341 kb on - strand, within Shewana3_3520 at 4221.352 kb on + strand, within Shewana3_3520 at 4221.369 kb on + strand, within Shewana3_3520 at 4221.369 kb on + strand, within Shewana3_3520 at 4221.377 kb on - strand, within Shewana3_3520 at 4221.377 kb on - strand, within Shewana3_3520 at 4221.409 kb on - strand, within Shewana3_3520 at 4221.426 kb on - strand, within Shewana3_3520
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,219,132 + Shewana3_3517 0.35 -1.2 4,219,186 - Shewana3_3517 0.40 +0.2 4,219,186 - Shewana3_3517 0.40 +0.5 4,219,253 + Shewana3_3517 0.47 -0.4 4,219,308 - Shewana3_3517 0.53 +0.4 4,219,319 - Shewana3_3517 0.54 -0.2 4,219,377 - Shewana3_3517 0.59 +0.3 4,219,426 + Shewana3_3517 0.64 -2.6 4,219,581 - Shewana3_3517 0.80 -1.5 4,220,050 + Shewana3_3518 0.11 -1.6 4,220,050 + Shewana3_3518 0.11 +0.1 4,220,567 - Shewana3_3519 0.22 +1.5 4,220,576 - Shewana3_3519 0.24 +0.4 4,220,612 - Shewana3_3519 0.30 +0.7 4,220,659 + Shewana3_3519 0.38 -2.1 4,220,724 + Shewana3_3519 0.49 -1.9 4,220,902 - Shewana3_3519 0.79 -0.2 4,220,995 + -2.3 4,221,051 - +0.3 4,221,186 + Shewana3_3520 0.11 +0.8 4,221,274 + Shewana3_3520 0.23 +0.4 4,221,341 - Shewana3_3520 0.32 -0.1 4,221,352 + Shewana3_3520 0.33 -0.2 4,221,369 + Shewana3_3520 0.36 -0.7 4,221,369 + Shewana3_3520 0.36 -1.3 4,221,377 - Shewana3_3520 0.37 -0.2 4,221,377 - Shewana3_3520 0.37 -0.4 4,221,409 - Shewana3_3520 0.41 -0.5 4,221,426 - Shewana3_3520 0.43 +0.2
Or see this region's nucleotide sequence