Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3478 and Shewana3_3479 are separated by 148 nucleotides Shewana3_3479 and Shewana3_3480 are separated by 354 nucleotides Shewana3_3480 and Shewana3_3481 are separated by 84 nucleotides Shewana3_3481 and Shewana3_3482 are separated by 333 nucleotides
Shewana3_3478: Shewana3_3478 - blue (type1) copper domain-containing protein (RefSeq), at 4,172,215 to 4,172,691
_3478
Shewana3_3479: Shewana3_3479 - hypothetical protein (RefSeq), at 4,172,840 to 4,173,145
_3479
Shewana3_3480: Shewana3_3480 - glycerophosphoryl diester phosphodiesterase (RefSeq), at 4,173,500 to 4,174,765
_3480
Shewana3_3481: Shewana3_3481 - hypoxanthine-guanine phosphoribosyltransferase (RefSeq), at 4,174,850 to 4,175,416
_3481
Shewana3_3482: Shewana3_3482 - alkaline phosphatase (RefSeq), at 4,175,750 to 4,177,516
_3482
Position (kb)
4173
4174
4175 Strain fitness (log2 ratio)
-2
-1
0
1 at 4172.554 kb on + strand, within Shewana3_3478 at 4172.562 kb on - strand, within Shewana3_3478 at 4172.642 kb on + strand, within Shewana3_3478 at 4172.731 kb on - strand at 4173.010 kb on - strand, within Shewana3_3479 at 4173.097 kb on - strand, within Shewana3_3479 at 4173.103 kb on - strand, within Shewana3_3479 at 4173.293 kb on + strand at 4173.370 kb on - strand at 4173.548 kb on - strand at 4173.666 kb on - strand, within Shewana3_3480 at 4173.696 kb on - strand, within Shewana3_3480 at 4173.818 kb on + strand, within Shewana3_3480 at 4173.842 kb on + strand, within Shewana3_3480 at 4173.850 kb on - strand, within Shewana3_3480 at 4173.908 kb on - strand, within Shewana3_3480 at 4174.021 kb on + strand, within Shewana3_3480 at 4174.082 kb on + strand, within Shewana3_3480 at 4174.140 kb on + strand, within Shewana3_3480 at 4174.210 kb on - strand, within Shewana3_3480 at 4174.210 kb on - strand, within Shewana3_3480 at 4174.405 kb on - strand, within Shewana3_3480 at 4174.419 kb on - strand, within Shewana3_3480 at 4174.424 kb on - strand, within Shewana3_3480 at 4174.451 kb on + strand, within Shewana3_3480 at 4174.475 kb on + strand, within Shewana3_3480 at 4174.529 kb on + strand, within Shewana3_3480 at 4174.712 kb on + strand at 4174.757 kb on + strand at 4174.955 kb on + strand, within Shewana3_3481 at 4174.963 kb on - strand, within Shewana3_3481 at 4174.968 kb on - strand, within Shewana3_3481 at 4175.162 kb on - strand, within Shewana3_3481 at 4175.350 kb on - strand, within Shewana3_3481 at 4175.427 kb on - strand at 4175.536 kb on + strand at 4175.632 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,172,554 + Shewana3_3478 0.71 +0.6 4,172,562 - Shewana3_3478 0.73 -0.1 4,172,642 + Shewana3_3478 0.90 +0.2 4,172,731 - -0.9 4,173,010 - Shewana3_3479 0.56 +1.0 4,173,097 - Shewana3_3479 0.84 +1.2 4,173,103 - Shewana3_3479 0.86 +0.6 4,173,293 + +0.7 4,173,370 - +0.2 4,173,548 - -0.5 4,173,666 - Shewana3_3480 0.13 -0.7 4,173,696 - Shewana3_3480 0.15 +0.3 4,173,818 + Shewana3_3480 0.25 +0.7 4,173,842 + Shewana3_3480 0.27 -1.9 4,173,850 - Shewana3_3480 0.28 +0.0 4,173,908 - Shewana3_3480 0.32 -0.5 4,174,021 + Shewana3_3480 0.41 -1.1 4,174,082 + Shewana3_3480 0.46 -0.5 4,174,140 + Shewana3_3480 0.51 -1.4 4,174,210 - Shewana3_3480 0.56 +0.4 4,174,210 - Shewana3_3480 0.56 -0.8 4,174,405 - Shewana3_3480 0.71 -0.4 4,174,419 - Shewana3_3480 0.73 +0.0 4,174,424 - Shewana3_3480 0.73 +0.4 4,174,451 + Shewana3_3480 0.75 +0.6 4,174,475 + Shewana3_3480 0.77 -0.2 4,174,529 + Shewana3_3480 0.81 +0.4 4,174,712 + +0.8 4,174,757 + +0.5 4,174,955 + Shewana3_3481 0.19 -1.5 4,174,963 - Shewana3_3481 0.20 +1.3 4,174,968 - Shewana3_3481 0.21 +0.3 4,175,162 - Shewana3_3481 0.55 +0.8 4,175,350 - Shewana3_3481 0.88 +0.6 4,175,427 - -0.2 4,175,536 + -0.2 4,175,632 - -0.2
Or see this region's nucleotide sequence