Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3462 and Shewana3_3463 are separated by 117 nucleotides Shewana3_3463 and Shewana3_3464 are separated by 126 nucleotides
Shewana3_3462: Shewana3_3462 - alpha/beta hydrolase domain-containing protein (RefSeq), at 4,151,848 to 4,152,837
_3462
Shewana3_3463: Shewana3_3463 - hypothetical protein (RefSeq), at 4,152,955 to 4,153,410
_3463
Shewana3_3464: Shewana3_3464 - amidase (RefSeq), at 4,153,537 to 4,155,243
_3464
Position (kb)
4152
4153
4154 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4151.989 kb on + strand, within Shewana3_3462 at 4151.997 kb on - strand, within Shewana3_3462 at 4151.997 kb on - strand, within Shewana3_3462 at 4151.997 kb on - strand, within Shewana3_3462 at 4151.999 kb on + strand, within Shewana3_3462 at 4151.999 kb on + strand, within Shewana3_3462 at 4151.999 kb on + strand, within Shewana3_3462 at 4152.077 kb on + strand, within Shewana3_3462 at 4152.229 kb on - strand, within Shewana3_3462 at 4152.271 kb on - strand, within Shewana3_3462 at 4152.323 kb on + strand, within Shewana3_3462 at 4152.379 kb on - strand, within Shewana3_3462 at 4152.455 kb on - strand, within Shewana3_3462 at 4152.485 kb on - strand, within Shewana3_3462 at 4152.485 kb on - strand, within Shewana3_3462 at 4152.698 kb on + strand, within Shewana3_3462 at 4152.737 kb on + strand, within Shewana3_3462 at 4152.745 kb on - strand at 4152.844 kb on - strand at 4153.033 kb on - strand, within Shewana3_3463 at 4153.071 kb on + strand, within Shewana3_3463 at 4153.079 kb on - strand, within Shewana3_3463 at 4153.100 kb on + strand, within Shewana3_3463 at 4153.110 kb on + strand, within Shewana3_3463 at 4153.118 kb on - strand, within Shewana3_3463 at 4153.128 kb on + strand, within Shewana3_3463 at 4153.156 kb on - strand, within Shewana3_3463 at 4153.242 kb on + strand, within Shewana3_3463 at 4153.313 kb on + strand, within Shewana3_3463 at 4153.332 kb on + strand, within Shewana3_3463 at 4153.340 kb on - strand, within Shewana3_3463 at 4153.360 kb on + strand, within Shewana3_3463 at 4153.362 kb on + strand, within Shewana3_3463 at 4153.400 kb on + strand at 4153.641 kb on + strand at 4153.648 kb on + strand at 4153.648 kb on + strand at 4153.693 kb on - strand at 4153.759 kb on + strand, within Shewana3_3464 at 4153.903 kb on - strand, within Shewana3_3464 at 4154.012 kb on + strand, within Shewana3_3464 at 4154.020 kb on - strand, within Shewana3_3464 at 4154.403 kb on + strand, within Shewana3_3464
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,151,989 + Shewana3_3462 0.14 -1.3 4,151,997 - Shewana3_3462 0.15 +0.0 4,151,997 - Shewana3_3462 0.15 -1.5 4,151,997 - Shewana3_3462 0.15 +1.1 4,151,999 + Shewana3_3462 0.15 +0.1 4,151,999 + Shewana3_3462 0.15 -0.4 4,151,999 + Shewana3_3462 0.15 -0.1 4,152,077 + Shewana3_3462 0.23 -0.6 4,152,229 - Shewana3_3462 0.38 -0.8 4,152,271 - Shewana3_3462 0.43 -2.1 4,152,323 + Shewana3_3462 0.48 -0.8 4,152,379 - Shewana3_3462 0.54 -0.8 4,152,455 - Shewana3_3462 0.61 +0.6 4,152,485 - Shewana3_3462 0.64 +0.1 4,152,485 - Shewana3_3462 0.64 +1.8 4,152,698 + Shewana3_3462 0.86 +0.1 4,152,737 + Shewana3_3462 0.90 +0.3 4,152,745 - +0.2 4,152,844 - -0.4 4,153,033 - Shewana3_3463 0.17 +0.0 4,153,071 + Shewana3_3463 0.25 +0.6 4,153,079 - Shewana3_3463 0.27 +0.8 4,153,100 + Shewana3_3463 0.32 +0.3 4,153,110 + Shewana3_3463 0.34 -0.4 4,153,118 - Shewana3_3463 0.36 -0.2 4,153,128 + Shewana3_3463 0.38 +0.3 4,153,156 - Shewana3_3463 0.44 +0.3 4,153,242 + Shewana3_3463 0.63 +1.2 4,153,313 + Shewana3_3463 0.79 +0.7 4,153,332 + Shewana3_3463 0.83 +0.0 4,153,340 - Shewana3_3463 0.84 -0.9 4,153,360 + Shewana3_3463 0.89 +0.4 4,153,362 + Shewana3_3463 0.89 +0.5 4,153,400 + +0.9 4,153,641 + -0.5 4,153,648 + -0.2 4,153,648 + -2.4 4,153,693 - -0.6 4,153,759 + Shewana3_3464 0.13 -2.1 4,153,903 - Shewana3_3464 0.21 +0.3 4,154,012 + Shewana3_3464 0.28 -2.2 4,154,020 - Shewana3_3464 0.28 +0.6 4,154,403 + Shewana3_3464 0.51 +1.4
Or see this region's nucleotide sequence