Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3418

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3417 and Shewana3_3418 are separated by 48 nucleotidesShewana3_3418 and Shewana3_3419 are separated by 62 nucleotides Shewana3_3417: Shewana3_3417 - glycine cleavage T protein (aminomethyl transferase) (RefSeq), at 4,087,578 to 4,088,534 _3417 Shewana3_3418: Shewana3_3418 - response regulator receiver modulated metal dependent phosphohydrolase (RefSeq), at 4,088,583 to 4,089,599 _3418 Shewana3_3419: Shewana3_3419 - multi-sensor hybrid histidine kinase (RefSeq), at 4,089,662 to 4,094,965 _3419 Position (kb) 4088 4089 4090Strain fitness (log2 ratio) -2 -1 0 1at 4088.591 kb on + strandat 4088.617 kb on + strandat 4088.809 kb on + strand, within Shewana3_3418at 4088.911 kb on - strand, within Shewana3_3418at 4088.978 kb on - strand, within Shewana3_3418at 4089.054 kb on - strand, within Shewana3_3418at 4089.070 kb on - strand, within Shewana3_3418at 4089.113 kb on - strand, within Shewana3_3418at 4089.346 kb on - strand, within Shewana3_3418at 4089.410 kb on + strand, within Shewana3_3418at 4089.418 kb on - strand, within Shewana3_3418at 4089.488 kb on + strand, within Shewana3_3418at 4089.610 kb on + strandat 4089.711 kb on + strandat 4089.739 kb on - strandat 4089.828 kb on - strandat 4089.849 kb on - strandat 4090.036 kb on + strandat 4090.309 kb on + strand, within Shewana3_3419at 4090.317 kb on - strand, within Shewana3_3419at 4090.422 kb on - strand, within Shewana3_3419at 4090.593 kb on + strand, within Shewana3_3419

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,088,591 + +0.6
4,088,617 + -2.6
4,088,809 + Shewana3_3418 0.22 -1.4
4,088,911 - Shewana3_3418 0.32 +0.4
4,088,978 - Shewana3_3418 0.39 +0.5
4,089,054 - Shewana3_3418 0.46 +0.1
4,089,070 - Shewana3_3418 0.48 +0.0
4,089,113 - Shewana3_3418 0.52 +0.3
4,089,346 - Shewana3_3418 0.75 -0.0
4,089,410 + Shewana3_3418 0.81 -0.6
4,089,418 - Shewana3_3418 0.82 -0.4
4,089,488 + Shewana3_3418 0.89 -0.4
4,089,610 + -2.4
4,089,711 + +0.4
4,089,739 - -0.4
4,089,828 - -1.6
4,089,849 - -0.6
4,090,036 + -0.0
4,090,309 + Shewana3_3419 0.12 +0.2
4,090,317 - Shewana3_3419 0.12 -1.2
4,090,422 - Shewana3_3419 0.14 -0.3
4,090,593 + Shewana3_3419 0.18 -1.6

Or see this region's nucleotide sequence