Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3361

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3359 and Shewana3_3360 are separated by 13 nucleotidesShewana3_3360 and Shewana3_3361 are separated by 70 nucleotidesShewana3_3361 and Shewana3_3362 are separated by 55 nucleotides Shewana3_3359: Shewana3_3359 - GGDEF domain-containing protein (RefSeq), at 4,030,024 to 4,031,037 _3359 Shewana3_3360: Shewana3_3360 - hypothetical protein (RefSeq), at 4,031,051 to 4,031,284 _3360 Shewana3_3361: Shewana3_3361 - protein of unknown function DUF306, Meta and HslJ (RefSeq), at 4,031,355 to 4,031,771 _3361 Shewana3_3362: Shewana3_3362 - sodium:dicarboxylate symporter (RefSeq), at 4,031,827 to 4,033,149 _3362 Position (kb) 4031 4032Strain fitness (log2 ratio) -2 -1 0 1at 4030.370 kb on - strand, within Shewana3_3359at 4030.370 kb on - strand, within Shewana3_3359at 4030.585 kb on - strand, within Shewana3_3359at 4030.803 kb on - strand, within Shewana3_3359at 4030.941 kb on + strandat 4031.024 kb on + strandat 4031.056 kb on - strandat 4031.128 kb on + strand, within Shewana3_3360at 4031.143 kb on + strand, within Shewana3_3360at 4031.143 kb on + strand, within Shewana3_3360at 4031.151 kb on - strand, within Shewana3_3360at 4031.198 kb on + strand, within Shewana3_3360at 4031.349 kb on + strandat 4031.495 kb on + strand, within Shewana3_3361at 4031.503 kb on - strand, within Shewana3_3361at 4031.632 kb on + strand, within Shewana3_3361at 4031.632 kb on + strand, within Shewana3_3361at 4031.665 kb on - strand, within Shewana3_3361at 4031.665 kb on - strand, within Shewana3_3361at 4031.721 kb on + strand, within Shewana3_3361at 4031.762 kb on + strandat 4031.884 kb on + strandat 4031.889 kb on - strandat 4031.907 kb on + strandat 4031.970 kb on + strand, within Shewana3_3362at 4031.979 kb on - strand, within Shewana3_3362at 4032.112 kb on + strand, within Shewana3_3362at 4032.200 kb on + strand, within Shewana3_3362at 4032.246 kb on - strand, within Shewana3_3362at 4032.249 kb on + strand, within Shewana3_3362at 4032.304 kb on + strand, within Shewana3_3362at 4032.505 kb on - strand, within Shewana3_3362at 4032.515 kb on + strand, within Shewana3_3362at 4032.554 kb on - strand, within Shewana3_3362at 4032.617 kb on + strand, within Shewana3_3362at 4032.731 kb on - strand, within Shewana3_3362

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,030,370 - Shewana3_3359 0.34 -0.5
4,030,370 - Shewana3_3359 0.34 -0.9
4,030,585 - Shewana3_3359 0.55 +0.7
4,030,803 - Shewana3_3359 0.77 -0.9
4,030,941 + +0.7
4,031,024 + -1.5
4,031,056 - +0.7
4,031,128 + Shewana3_3360 0.33 +0.6
4,031,143 + Shewana3_3360 0.39 +0.1
4,031,143 + Shewana3_3360 0.39 +0.2
4,031,151 - Shewana3_3360 0.43 +0.8
4,031,198 + Shewana3_3360 0.63 -0.3
4,031,349 + +1.0
4,031,495 + Shewana3_3361 0.34 +0.4
4,031,503 - Shewana3_3361 0.35 +0.9
4,031,632 + Shewana3_3361 0.66 +1.6
4,031,632 + Shewana3_3361 0.66 +0.6
4,031,665 - Shewana3_3361 0.74 -1.4
4,031,665 - Shewana3_3361 0.74 -0.6
4,031,721 + Shewana3_3361 0.88 +1.1
4,031,762 + +0.6
4,031,884 + +1.3
4,031,889 - +0.5
4,031,907 + -1.8
4,031,970 + Shewana3_3362 0.11 -2.4
4,031,979 - Shewana3_3362 0.11 +0.6
4,032,112 + Shewana3_3362 0.22 -0.6
4,032,200 + Shewana3_3362 0.28 -1.6
4,032,246 - Shewana3_3362 0.32 +0.6
4,032,249 + Shewana3_3362 0.32 +0.0
4,032,304 + Shewana3_3362 0.36 -2.1
4,032,505 - Shewana3_3362 0.51 -0.0
4,032,515 + Shewana3_3362 0.52 -1.2
4,032,554 - Shewana3_3362 0.55 +0.2
4,032,617 + Shewana3_3362 0.60 -0.8
4,032,731 - Shewana3_3362 0.68 +0.9

Or see this region's nucleotide sequence