Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3359 and Shewana3_3360 are separated by 13 nucleotides Shewana3_3360 and Shewana3_3361 are separated by 70 nucleotides Shewana3_3361 and Shewana3_3362 are separated by 55 nucleotides
Shewana3_3359: Shewana3_3359 - GGDEF domain-containing protein (RefSeq), at 4,030,024 to 4,031,037
_3359
Shewana3_3360: Shewana3_3360 - hypothetical protein (RefSeq), at 4,031,051 to 4,031,284
_3360
Shewana3_3361: Shewana3_3361 - protein of unknown function DUF306, Meta and HslJ (RefSeq), at 4,031,355 to 4,031,771
_3361
Shewana3_3362: Shewana3_3362 - sodium:dicarboxylate symporter (RefSeq), at 4,031,827 to 4,033,149
_3362
Position (kb)
4031
4032 Strain fitness (log2 ratio)
-2
-1
0
1 at 4030.370 kb on - strand, within Shewana3_3359 at 4030.370 kb on - strand, within Shewana3_3359 at 4030.585 kb on - strand, within Shewana3_3359 at 4030.803 kb on - strand, within Shewana3_3359 at 4030.941 kb on + strand at 4031.024 kb on + strand at 4031.056 kb on - strand at 4031.128 kb on + strand, within Shewana3_3360 at 4031.143 kb on + strand, within Shewana3_3360 at 4031.143 kb on + strand, within Shewana3_3360 at 4031.151 kb on - strand, within Shewana3_3360 at 4031.198 kb on + strand, within Shewana3_3360 at 4031.349 kb on + strand at 4031.495 kb on + strand, within Shewana3_3361 at 4031.503 kb on - strand, within Shewana3_3361 at 4031.632 kb on + strand, within Shewana3_3361 at 4031.632 kb on + strand, within Shewana3_3361 at 4031.665 kb on - strand, within Shewana3_3361 at 4031.665 kb on - strand, within Shewana3_3361 at 4031.721 kb on + strand, within Shewana3_3361 at 4031.762 kb on + strand at 4031.884 kb on + strand at 4031.889 kb on - strand at 4031.907 kb on + strand at 4031.970 kb on + strand, within Shewana3_3362 at 4031.979 kb on - strand, within Shewana3_3362 at 4032.112 kb on + strand, within Shewana3_3362 at 4032.200 kb on + strand, within Shewana3_3362 at 4032.246 kb on - strand, within Shewana3_3362 at 4032.249 kb on + strand, within Shewana3_3362 at 4032.304 kb on + strand, within Shewana3_3362 at 4032.505 kb on - strand, within Shewana3_3362 at 4032.515 kb on + strand, within Shewana3_3362 at 4032.554 kb on - strand, within Shewana3_3362 at 4032.617 kb on + strand, within Shewana3_3362 at 4032.731 kb on - strand, within Shewana3_3362
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,030,370 - Shewana3_3359 0.34 -0.5 4,030,370 - Shewana3_3359 0.34 -0.9 4,030,585 - Shewana3_3359 0.55 +0.7 4,030,803 - Shewana3_3359 0.77 -0.9 4,030,941 + +0.7 4,031,024 + -1.5 4,031,056 - +0.7 4,031,128 + Shewana3_3360 0.33 +0.6 4,031,143 + Shewana3_3360 0.39 +0.1 4,031,143 + Shewana3_3360 0.39 +0.2 4,031,151 - Shewana3_3360 0.43 +0.8 4,031,198 + Shewana3_3360 0.63 -0.3 4,031,349 + +1.0 4,031,495 + Shewana3_3361 0.34 +0.4 4,031,503 - Shewana3_3361 0.35 +0.9 4,031,632 + Shewana3_3361 0.66 +1.6 4,031,632 + Shewana3_3361 0.66 +0.6 4,031,665 - Shewana3_3361 0.74 -1.4 4,031,665 - Shewana3_3361 0.74 -0.6 4,031,721 + Shewana3_3361 0.88 +1.1 4,031,762 + +0.6 4,031,884 + +1.3 4,031,889 - +0.5 4,031,907 + -1.8 4,031,970 + Shewana3_3362 0.11 -2.4 4,031,979 - Shewana3_3362 0.11 +0.6 4,032,112 + Shewana3_3362 0.22 -0.6 4,032,200 + Shewana3_3362 0.28 -1.6 4,032,246 - Shewana3_3362 0.32 +0.6 4,032,249 + Shewana3_3362 0.32 +0.0 4,032,304 + Shewana3_3362 0.36 -2.1 4,032,505 - Shewana3_3362 0.51 -0.0 4,032,515 + Shewana3_3362 0.52 -1.2 4,032,554 - Shewana3_3362 0.55 +0.2 4,032,617 + Shewana3_3362 0.60 -0.8 4,032,731 - Shewana3_3362 0.68 +0.9
Or see this region's nucleotide sequence