Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3346 and Shewana3_3347 overlap by 8 nucleotides Shewana3_3347 and Shewana3_3348 are separated by 166 nucleotides Shewana3_3348 and Shewana3_3349 are separated by 240 nucleotides
Shewana3_3346: Shewana3_3346 - hypothetical protein (RefSeq), at 4,014,861 to 4,015,409
_3346
Shewana3_3347: Shewana3_3347 - transcriptional regulator (RefSeq), at 4,015,402 to 4,016,151
_3347
Shewana3_3348: Shewana3_3348 - Na+/H+ antiporter (RefSeq), at 4,016,318 to 4,017,787
_3348
Shewana3_3349: Shewana3_3349 - hypothetical protein (RefSeq), at 4,018,028 to 4,018,765
_3349
Position (kb)
4016
4017
4018 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4015.327 kb on - strand, within Shewana3_3346 at 4015.589 kb on + strand, within Shewana3_3347 at 4015.601 kb on + strand, within Shewana3_3347 at 4015.756 kb on - strand, within Shewana3_3347 at 4015.999 kb on + strand, within Shewana3_3347 at 4016.007 kb on - strand, within Shewana3_3347 at 4016.426 kb on + strand at 4016.534 kb on + strand, within Shewana3_3348 at 4016.670 kb on - strand, within Shewana3_3348 at 4016.685 kb on + strand, within Shewana3_3348 at 4016.716 kb on - strand, within Shewana3_3348 at 4016.749 kb on + strand, within Shewana3_3348 at 4016.844 kb on + strand, within Shewana3_3348 at 4017.240 kb on - strand, within Shewana3_3348 at 4017.278 kb on + strand, within Shewana3_3348 at 4017.278 kb on + strand, within Shewana3_3348 at 4017.327 kb on + strand, within Shewana3_3348 at 4017.761 kb on - strand at 4017.808 kb on - strand at 4018.035 kb on + strand at 4018.035 kb on + strand at 4018.282 kb on + strand, within Shewana3_3349 at 4018.282 kb on + strand, within Shewana3_3349 at 4018.309 kb on - strand, within Shewana3_3349 at 4018.731 kb on + strand at 4018.731 kb on + strand at 4018.733 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,015,327 - Shewana3_3346 0.85 +0.4 4,015,589 + Shewana3_3347 0.25 -0.4 4,015,601 + Shewana3_3347 0.27 -0.6 4,015,756 - Shewana3_3347 0.47 -0.4 4,015,999 + Shewana3_3347 0.80 -0.2 4,016,007 - Shewana3_3347 0.81 -0.5 4,016,426 + -1.0 4,016,534 + Shewana3_3348 0.15 +2.0 4,016,670 - Shewana3_3348 0.24 -0.9 4,016,685 + Shewana3_3348 0.25 -0.8 4,016,716 - Shewana3_3348 0.27 -0.2 4,016,749 + Shewana3_3348 0.29 +0.5 4,016,844 + Shewana3_3348 0.36 -0.6 4,017,240 - Shewana3_3348 0.63 -0.4 4,017,278 + Shewana3_3348 0.65 -0.8 4,017,278 + Shewana3_3348 0.65 -1.4 4,017,327 + Shewana3_3348 0.69 -2.0 4,017,761 - +0.1 4,017,808 - -0.2 4,018,035 + -1.0 4,018,035 + -0.5 4,018,282 + Shewana3_3349 0.34 +0.0 4,018,282 + Shewana3_3349 0.34 -1.5 4,018,309 - Shewana3_3349 0.38 +1.3 4,018,731 + +0.0 4,018,731 + -0.5 4,018,733 + -1.0
Or see this region's nucleotide sequence