Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3348

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3346 and Shewana3_3347 overlap by 8 nucleotidesShewana3_3347 and Shewana3_3348 are separated by 166 nucleotidesShewana3_3348 and Shewana3_3349 are separated by 240 nucleotides Shewana3_3346: Shewana3_3346 - hypothetical protein (RefSeq), at 4,014,861 to 4,015,409 _3346 Shewana3_3347: Shewana3_3347 - transcriptional regulator (RefSeq), at 4,015,402 to 4,016,151 _3347 Shewana3_3348: Shewana3_3348 - Na+/H+ antiporter (RefSeq), at 4,016,318 to 4,017,787 _3348 Shewana3_3349: Shewana3_3349 - hypothetical protein (RefSeq), at 4,018,028 to 4,018,765 _3349 Position (kb) 4016 4017 4018Strain fitness (log2 ratio) -2 -1 0 1 2at 4015.327 kb on - strand, within Shewana3_3346at 4015.589 kb on + strand, within Shewana3_3347at 4015.601 kb on + strand, within Shewana3_3347at 4015.756 kb on - strand, within Shewana3_3347at 4015.999 kb on + strand, within Shewana3_3347at 4016.007 kb on - strand, within Shewana3_3347at 4016.426 kb on + strandat 4016.534 kb on + strand, within Shewana3_3348at 4016.670 kb on - strand, within Shewana3_3348at 4016.685 kb on + strand, within Shewana3_3348at 4016.716 kb on - strand, within Shewana3_3348at 4016.749 kb on + strand, within Shewana3_3348at 4016.844 kb on + strand, within Shewana3_3348at 4017.240 kb on - strand, within Shewana3_3348at 4017.278 kb on + strand, within Shewana3_3348at 4017.278 kb on + strand, within Shewana3_3348at 4017.327 kb on + strand, within Shewana3_3348at 4017.761 kb on - strandat 4017.808 kb on - strandat 4018.035 kb on + strandat 4018.035 kb on + strandat 4018.282 kb on + strand, within Shewana3_3349at 4018.282 kb on + strand, within Shewana3_3349at 4018.309 kb on - strand, within Shewana3_3349at 4018.731 kb on + strandat 4018.731 kb on + strandat 4018.733 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,015,327 - Shewana3_3346 0.85 +0.4
4,015,589 + Shewana3_3347 0.25 -0.4
4,015,601 + Shewana3_3347 0.27 -0.6
4,015,756 - Shewana3_3347 0.47 -0.4
4,015,999 + Shewana3_3347 0.80 -0.2
4,016,007 - Shewana3_3347 0.81 -0.5
4,016,426 + -1.0
4,016,534 + Shewana3_3348 0.15 +2.0
4,016,670 - Shewana3_3348 0.24 -0.9
4,016,685 + Shewana3_3348 0.25 -0.8
4,016,716 - Shewana3_3348 0.27 -0.2
4,016,749 + Shewana3_3348 0.29 +0.5
4,016,844 + Shewana3_3348 0.36 -0.6
4,017,240 - Shewana3_3348 0.63 -0.4
4,017,278 + Shewana3_3348 0.65 -0.8
4,017,278 + Shewana3_3348 0.65 -1.4
4,017,327 + Shewana3_3348 0.69 -2.0
4,017,761 - +0.1
4,017,808 - -0.2
4,018,035 + -1.0
4,018,035 + -0.5
4,018,282 + Shewana3_3349 0.34 +0.0
4,018,282 + Shewana3_3349 0.34 -1.5
4,018,309 - Shewana3_3349 0.38 +1.3
4,018,731 + +0.0
4,018,731 + -0.5
4,018,733 + -1.0

Or see this region's nucleotide sequence