Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3344 and Shewana3_3345 are separated by 10 nucleotides Shewana3_3345 and Shewana3_3346 are separated by 67 nucleotides Shewana3_3346 and Shewana3_3347 overlap by 8 nucleotides Shewana3_3347 and Shewana3_3348 are separated by 166 nucleotides
Shewana3_3344: Shewana3_3344 - cytochrome c, putative (RefSeq), at 4,013,434 to 4,014,258
_3344
Shewana3_3345: Shewana3_3345 - hypothetical protein (RefSeq), at 4,014,269 to 4,014,793
_3345
Shewana3_3346: Shewana3_3346 - hypothetical protein (RefSeq), at 4,014,861 to 4,015,409
_3346
Shewana3_3347: Shewana3_3347 - transcriptional regulator (RefSeq), at 4,015,402 to 4,016,151
_3347
Shewana3_3348: Shewana3_3348 - Na+/H+ antiporter (RefSeq), at 4,016,318 to 4,017,787
_3348
Position (kb)
4014
4015
4016 Strain fitness (log2 ratio)
-2
-1
0
1 at 4013.901 kb on + strand, within Shewana3_3344 at 4013.976 kb on + strand, within Shewana3_3344 at 4014.008 kb on + strand, within Shewana3_3344 at 4014.067 kb on + strand, within Shewana3_3344 at 4014.067 kb on + strand, within Shewana3_3344 at 4014.070 kb on - strand, within Shewana3_3344 at 4014.075 kb on - strand, within Shewana3_3344 at 4014.085 kb on + strand, within Shewana3_3344 at 4014.242 kb on - strand at 4014.288 kb on + strand at 4014.311 kb on + strand at 4014.311 kb on + strand at 4014.357 kb on - strand, within Shewana3_3345 at 4014.393 kb on + strand, within Shewana3_3345 at 4014.415 kb on - strand, within Shewana3_3345 at 4014.566 kb on - strand, within Shewana3_3345 at 4014.920 kb on + strand, within Shewana3_3346 at 4015.132 kb on + strand, within Shewana3_3346 at 4015.151 kb on + strand, within Shewana3_3346 at 4015.327 kb on - strand, within Shewana3_3346 at 4015.589 kb on + strand, within Shewana3_3347 at 4015.601 kb on + strand, within Shewana3_3347 at 4015.756 kb on - strand, within Shewana3_3347 at 4015.999 kb on + strand, within Shewana3_3347 at 4016.007 kb on - strand, within Shewana3_3347
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,013,901 + Shewana3_3344 0.57 -0.3 4,013,976 + Shewana3_3344 0.66 +0.4 4,014,008 + Shewana3_3344 0.70 +0.3 4,014,067 + Shewana3_3344 0.77 +0.2 4,014,067 + Shewana3_3344 0.77 +0.1 4,014,070 - Shewana3_3344 0.77 -0.5 4,014,075 - Shewana3_3344 0.78 -1.6 4,014,085 + Shewana3_3344 0.79 +0.1 4,014,242 - -1.3 4,014,288 + +1.6 4,014,311 + +0.1 4,014,311 + +0.3 4,014,357 - Shewana3_3345 0.17 -0.6 4,014,393 + Shewana3_3345 0.24 -0.4 4,014,415 - Shewana3_3345 0.28 +0.1 4,014,566 - Shewana3_3345 0.57 -0.4 4,014,920 + Shewana3_3346 0.11 -2.5 4,015,132 + Shewana3_3346 0.49 -0.8 4,015,151 + Shewana3_3346 0.53 -0.6 4,015,327 - Shewana3_3346 0.85 +0.4 4,015,589 + Shewana3_3347 0.25 -0.4 4,015,601 + Shewana3_3347 0.27 -0.6 4,015,756 - Shewana3_3347 0.47 -0.4 4,015,999 + Shewana3_3347 0.80 -0.2 4,016,007 - Shewana3_3347 0.81 -0.5
Or see this region's nucleotide sequence