Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3123 and Shewana3_3124 are separated by 192 nucleotides Shewana3_3124 and Shewana3_3125 are separated by 237 nucleotides Shewana3_3125 and Shewana3_3126 are separated by 153 nucleotides
Shewana3_3123: Shewana3_3123 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq), at 3,749,095 to 3,750,384
_3123
Shewana3_3124: Shewana3_3124 - nitrogen regulatory protein P-II (RefSeq), at 3,750,577 to 3,750,915
_3124
Shewana3_3125: Shewana3_3125 - methylation site containing protein (RefSeq), at 3,751,153 to 3,751,665
_3125
Shewana3_3126: Shewana3_3126 - methylation site containing protein (RefSeq), at 3,751,819 to 3,752,301
_3126
Position (kb)
3750
3751 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3749.656 kb on - strand, within Shewana3_3123 at 3750.028 kb on + strand, within Shewana3_3123 at 3750.225 kb on + strand, within Shewana3_3123 at 3750.341 kb on - strand at 3750.342 kb on - strand at 3750.356 kb on - strand at 3750.426 kb on + strand at 3750.571 kb on + strand at 3750.613 kb on - strand, within Shewana3_3124 at 3750.758 kb on + strand, within Shewana3_3124 at 3750.758 kb on + strand, within Shewana3_3124 at 3750.982 kb on - strand at 3751.000 kb on - strand at 3751.106 kb on - strand at 3751.158 kb on - strand at 3751.172 kb on + strand at 3751.172 kb on + strand at 3751.180 kb on - strand at 3751.180 kb on - strand at 3751.180 kb on - strand at 3751.180 kb on - strand at 3751.189 kb on - strand at 3751.263 kb on + strand, within Shewana3_3125 at 3751.301 kb on + strand, within Shewana3_3125 at 3751.309 kb on - strand, within Shewana3_3125 at 3751.359 kb on - strand, within Shewana3_3125 at 3751.524 kb on + strand, within Shewana3_3125 at 3751.540 kb on - strand, within Shewana3_3125 at 3751.540 kb on - strand, within Shewana3_3125 at 3751.547 kb on - strand, within Shewana3_3125 at 3751.594 kb on - strand, within Shewana3_3125 at 3751.601 kb on + strand, within Shewana3_3125 at 3751.625 kb on + strand at 3751.633 kb on - strand at 3751.635 kb on + strand at 3751.639 kb on + strand at 3751.640 kb on - strand at 3751.640 kb on - strand at 3751.640 kb on - strand at 3751.789 kb on - strand at 3751.806 kb on - strand at 3751.806 kb on - strand at 3751.811 kb on - strand at 3751.846 kb on - strand at 3751.855 kb on - strand at 3751.862 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,749,656 - Shewana3_3123 0.43 -0.0 3,750,028 + Shewana3_3123 0.72 +2.2 3,750,225 + Shewana3_3123 0.88 -1.3 3,750,341 - -2.0 3,750,342 - -1.5 3,750,356 - -2.2 3,750,426 + +0.6 3,750,571 + -0.7 3,750,613 - Shewana3_3124 0.11 +0.9 3,750,758 + Shewana3_3124 0.53 -0.8 3,750,758 + Shewana3_3124 0.53 +0.2 3,750,982 - +0.2 3,751,000 - -0.4 3,751,106 - +0.7 3,751,158 - +0.7 3,751,172 + -1.7 3,751,172 + -0.4 3,751,180 - -0.4 3,751,180 - -0.2 3,751,180 - -1.2 3,751,180 - +0.4 3,751,189 - +0.7 3,751,263 + Shewana3_3125 0.21 -0.9 3,751,301 + Shewana3_3125 0.29 +0.0 3,751,309 - Shewana3_3125 0.30 -0.1 3,751,359 - Shewana3_3125 0.40 -2.6 3,751,524 + Shewana3_3125 0.72 +0.4 3,751,540 - Shewana3_3125 0.75 -0.4 3,751,540 - Shewana3_3125 0.75 -0.7 3,751,547 - Shewana3_3125 0.77 -0.5 3,751,594 - Shewana3_3125 0.86 -0.2 3,751,601 + Shewana3_3125 0.87 +0.9 3,751,625 + +0.8 3,751,633 - +1.1 3,751,635 + +0.5 3,751,639 + -1.5 3,751,640 - +0.1 3,751,640 - +1.0 3,751,640 - +0.4 3,751,789 - -0.7 3,751,806 - -0.4 3,751,806 - -1.6 3,751,811 - -1.7 3,751,846 - -2.2 3,751,855 - -0.5 3,751,862 - +0.1
Or see this region's nucleotide sequence