Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3122
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
3,747,027 | - | Shewana3_3121 | 0.79 | -0.9 | |
3,747,043 | + | Shewana3_3121 | 0.79 | -3.1 | |
3,747,043 | + | Shewana3_3121 | 0.79 | -0.9 | |
3,747,051 | - | Shewana3_3121 | 0.80 | -0.0 | |
3,747,113 | + | Shewana3_3121 | 0.82 | -0.2 | |
3,747,123 | + | Shewana3_3121 | 0.82 | -0.7 | |
3,747,153 | + | Shewana3_3121 | 0.84 | +0.3 | |
3,747,161 | - | Shewana3_3121 | 0.84 | -1.4 | |
3,747,166 | - | Shewana3_3121 | 0.84 | -0.9 | |
3,747,306 | + | Shewana3_3121 | 0.89 | -1.2 | |
3,747,314 | - | Shewana3_3121 | 0.90 | -0.2 | |
3,747,507 | + | +3.2 | |||
3,747,877 | - | -0.4 | |||
3,747,930 | - | -0.2 | |||
3,748,406 | + | Shewana3_3122 | 0.38 | -2.4 | |
3,748,471 | + | Shewana3_3122 | 0.45 | -0.4 | |
3,748,558 | - | Shewana3_3122 | 0.53 | -0.7 | |
3,748,585 | + | Shewana3_3122 | 0.56 | -0.6 | |
3,748,892 | - | Shewana3_3122 | 0.86 | +0.6 | |
3,748,892 | - | Shewana3_3122 | 0.86 | +0.6 | |
3,748,943 | - | +0.6 | |||
3,749,010 | + | +0.4 | |||
3,749,319 | - | Shewana3_3123 | 0.17 | +0.9 | |
3,749,320 | - | Shewana3_3123 | 0.17 | +0.3 | |
3,749,656 | - | Shewana3_3123 | 0.43 | -0.0 | |
3,750,028 | + | Shewana3_3123 | 0.72 | +2.2 |
Or see this region's nucleotide sequence