Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3103

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_3101 and Shewana3_3102 are separated by 44 nucleotidesShewana3_3102 and Shewana3_3103 are separated by 85 nucleotidesShewana3_3103 and Shewana3_3104 are separated by 145 nucleotidesShewana3_3104 and Shewana3_3105 are separated by 165 nucleotides Shewana3_3101: Shewana3_3101 - FAD dependent oxidoreductase (RefSeq), at 3,720,060 to 3,721,367 _3101 Shewana3_3102: Shewana3_3102 - hypothetical protein (RefSeq), at 3,721,412 to 3,721,924 _3102 Shewana3_3103: Shewana3_3103 - rhodanese domain-containing protein (RefSeq), at 3,722,010 to 3,722,867 _3103 Shewana3_3104: Shewana3_3104 - rare lipoprotein A (RefSeq), at 3,723,013 to 3,723,408 _3104 Shewana3_3105: Shewana3_3105 - aldehyde dehydrogenase (acceptor) (RefSeq), at 3,723,574 to 3,725,070 _3105 Position (kb) 3722 3723Strain fitness (log2 ratio) -2 -1 0 1 2at 3721.180 kb on + strand, within Shewana3_3101at 3721.183 kb on - strand, within Shewana3_3101at 3721.361 kb on + strandat 3721.406 kb on - strandat 3721.459 kb on + strandat 3721.546 kb on + strand, within Shewana3_3102at 3721.590 kb on + strand, within Shewana3_3102at 3721.707 kb on + strand, within Shewana3_3102at 3721.823 kb on - strand, within Shewana3_3102at 3721.823 kb on - strand, within Shewana3_3102at 3721.942 kb on + strandat 3721.948 kb on + strandat 3722.274 kb on - strand, within Shewana3_3103at 3722.284 kb on - strand, within Shewana3_3103at 3722.484 kb on + strand, within Shewana3_3103at 3722.492 kb on - strand, within Shewana3_3103at 3722.644 kb on + strand, within Shewana3_3103at 3722.662 kb on - strand, within Shewana3_3103at 3722.747 kb on + strand, within Shewana3_3103at 3722.786 kb on - strandat 3722.830 kb on + strandat 3722.848 kb on - strandat 3722.949 kb on + strandat 3723.072 kb on + strand, within Shewana3_3104at 3723.145 kb on - strand, within Shewana3_3104at 3723.145 kb on - strand, within Shewana3_3104at 3723.473 kb on + strandat 3723.491 kb on - strandat 3723.772 kb on - strand, within Shewana3_3105at 3723.854 kb on + strand, within Shewana3_3105

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
3,721,180 + Shewana3_3101 0.86 +0.3
3,721,183 - Shewana3_3101 0.86 -1.2
3,721,361 + +0.4
3,721,406 - -0.8
3,721,459 + -0.5
3,721,546 + Shewana3_3102 0.26 +0.3
3,721,590 + Shewana3_3102 0.35 -0.4
3,721,707 + Shewana3_3102 0.58 -1.8
3,721,823 - Shewana3_3102 0.80 -0.7
3,721,823 - Shewana3_3102 0.80 +0.1
3,721,942 + -1.0
3,721,948 + +0.3
3,722,274 - Shewana3_3103 0.31 +0.0
3,722,284 - Shewana3_3103 0.32 +0.4
3,722,484 + Shewana3_3103 0.55 -1.1
3,722,492 - Shewana3_3103 0.56 -0.4
3,722,644 + Shewana3_3103 0.74 -1.6
3,722,662 - Shewana3_3103 0.76 -0.5
3,722,747 + Shewana3_3103 0.86 -1.8
3,722,786 - -0.4
3,722,830 + -1.8
3,722,848 - +0.5
3,722,949 + +2.2
3,723,072 + Shewana3_3104 0.15 -2.3
3,723,145 - Shewana3_3104 0.33 -0.5
3,723,145 - Shewana3_3104 0.33 -1.0
3,723,473 + +1.4
3,723,491 - -0.2
3,723,772 - Shewana3_3105 0.13 +0.4
3,723,854 + Shewana3_3105 0.19 -0.7

Or see this region's nucleotide sequence