Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3101 and Shewana3_3102 are separated by 44 nucleotides Shewana3_3102 and Shewana3_3103 are separated by 85 nucleotides Shewana3_3103 and Shewana3_3104 are separated by 145 nucleotides Shewana3_3104 and Shewana3_3105 are separated by 165 nucleotides
Shewana3_3101: Shewana3_3101 - FAD dependent oxidoreductase (RefSeq), at 3,720,060 to 3,721,367
_3101
Shewana3_3102: Shewana3_3102 - hypothetical protein (RefSeq), at 3,721,412 to 3,721,924
_3102
Shewana3_3103: Shewana3_3103 - rhodanese domain-containing protein (RefSeq), at 3,722,010 to 3,722,867
_3103
Shewana3_3104: Shewana3_3104 - rare lipoprotein A (RefSeq), at 3,723,013 to 3,723,408
_3104
Shewana3_3105: Shewana3_3105 - aldehyde dehydrogenase (acceptor) (RefSeq), at 3,723,574 to 3,725,070
_3105
Position (kb)
3722
3723 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3721.180 kb on + strand, within Shewana3_3101 at 3721.183 kb on - strand, within Shewana3_3101 at 3721.361 kb on + strand at 3721.406 kb on - strand at 3721.459 kb on + strand at 3721.546 kb on + strand, within Shewana3_3102 at 3721.590 kb on + strand, within Shewana3_3102 at 3721.707 kb on + strand, within Shewana3_3102 at 3721.823 kb on - strand, within Shewana3_3102 at 3721.823 kb on - strand, within Shewana3_3102 at 3721.942 kb on + strand at 3721.948 kb on + strand at 3722.274 kb on - strand, within Shewana3_3103 at 3722.284 kb on - strand, within Shewana3_3103 at 3722.484 kb on + strand, within Shewana3_3103 at 3722.492 kb on - strand, within Shewana3_3103 at 3722.644 kb on + strand, within Shewana3_3103 at 3722.662 kb on - strand, within Shewana3_3103 at 3722.747 kb on + strand, within Shewana3_3103 at 3722.786 kb on - strand at 3722.830 kb on + strand at 3722.848 kb on - strand at 3722.949 kb on + strand at 3723.072 kb on + strand, within Shewana3_3104 at 3723.145 kb on - strand, within Shewana3_3104 at 3723.145 kb on - strand, within Shewana3_3104 at 3723.473 kb on + strand at 3723.491 kb on - strand at 3723.772 kb on - strand, within Shewana3_3105 at 3723.854 kb on + strand, within Shewana3_3105
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,721,180 + Shewana3_3101 0.86 +0.3 3,721,183 - Shewana3_3101 0.86 -1.2 3,721,361 + +0.4 3,721,406 - -0.8 3,721,459 + -0.5 3,721,546 + Shewana3_3102 0.26 +0.3 3,721,590 + Shewana3_3102 0.35 -0.4 3,721,707 + Shewana3_3102 0.58 -1.8 3,721,823 - Shewana3_3102 0.80 -0.7 3,721,823 - Shewana3_3102 0.80 +0.1 3,721,942 + -1.0 3,721,948 + +0.3 3,722,274 - Shewana3_3103 0.31 +0.0 3,722,284 - Shewana3_3103 0.32 +0.4 3,722,484 + Shewana3_3103 0.55 -1.1 3,722,492 - Shewana3_3103 0.56 -0.4 3,722,644 + Shewana3_3103 0.74 -1.6 3,722,662 - Shewana3_3103 0.76 -0.5 3,722,747 + Shewana3_3103 0.86 -1.8 3,722,786 - -0.4 3,722,830 + -1.8 3,722,848 - +0.5 3,722,949 + +2.2 3,723,072 + Shewana3_3104 0.15 -2.3 3,723,145 - Shewana3_3104 0.33 -0.5 3,723,145 - Shewana3_3104 0.33 -1.0 3,723,473 + +1.4 3,723,491 - -0.2 3,723,772 - Shewana3_3105 0.13 +0.4 3,723,854 + Shewana3_3105 0.19 -0.7
Or see this region's nucleotide sequence