Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3028 and Shewana3_3029 are separated by 167 nucleotides Shewana3_3029 and Shewana3_3030 are separated by 11 nucleotides Shewana3_3030 and Shewana3_3031 are separated by 12 nucleotides Shewana3_3031 and Shewana3_3032 are separated by 26 nucleotides
Shewana3_3028: Shewana3_3028 - GTP-binding protein LepA (RefSeq), at 3,633,207 to 3,634,997
_3028
Shewana3_3029: Shewana3_3029 - positive regulator of sigma(E), RseC/MucC (RefSeq), at 3,635,165 to 3,635,638
_3029
Shewana3_3030: Shewana3_3030 - sigma E regulatory protein, MucB/RseB (RefSeq), at 3,635,650 to 3,636,582
_3030
Shewana3_3031: Shewana3_3031 - anti sigma-E protein, RseA (RefSeq), at 3,636,595 to 3,637,218
_3031
Shewana3_3032: Shewana3_3032 - RNA polymerase sigma factor RpoE (RefSeq), at 3,637,245 to 3,637,823
_3032
Position (kb) 3635
3636
3637 Strain fitness (log2 ratio) -1
0
1
2 at 3635.910 kb on - strand, within Shewana3_3030 at 3636.169 kb on - strand, within Shewana3_3030 at 3636.448 kb on - strand, within Shewana3_3030 at 3636.525 kb on - strand at 3636.942 kb on - strand, within Shewana3_3031
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,635,910 - Shewana3_3030 0.28 +1.3 3,636,169 - Shewana3_3030 0.56 +0.9 3,636,448 - Shewana3_3030 0.86 +2.4 3,636,525 - +2.4 3,636,942 - Shewana3_3031 0.56 -0.8
Or see this region's nucleotide sequence