Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3011

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3010 and Shewana3_3011 are separated by 51 nucleotidesShewana3_3011 and tyrA are separated by 216 nucleotides Shewana3_3010: Shewana3_3010 - oxidoreductase FAD-binding subunit (RefSeq), at 3,616,021 to 3,617,163 _3010 Shewana3_3011: Shewana3_3011 - hydroxylamine reductase (RefSeq), at 3,617,215 to 3,618,879 _3011 Shewana3_3012: tyrA - bifunctional chorismate mutase/prephenate dehydrogenase (RefSeq), at 3,619,096 to 3,620,235 tyrA Position (kb) 3617 3618 3619Strain fitness (log2 ratio) -3 -2 -1 0 1at 3616.431 kb on + strand, within Shewana3_3010at 3616.519 kb on - strand, within Shewana3_3010at 3616.601 kb on + strand, within Shewana3_3010at 3616.601 kb on + strand, within Shewana3_3010at 3616.641 kb on + strand, within Shewana3_3010at 3617.052 kb on + strandat 3617.160 kb on + strandat 3617.474 kb on - strand, within Shewana3_3011at 3617.945 kb on - strand, within Shewana3_3011at 3618.048 kb on + strand, within Shewana3_3011at 3618.198 kb on - strand, within Shewana3_3011at 3618.330 kb on - strand, within Shewana3_3011at 3618.417 kb on - strand, within Shewana3_3011at 3618.417 kb on - strand, within Shewana3_3011at 3618.608 kb on - strand, within Shewana3_3011at 3618.704 kb on - strand, within Shewana3_3011at 3618.709 kb on - strand, within Shewana3_3011at 3619.844 kb on + strand, within tyrA

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,616,431 + Shewana3_3010 0.36 -0.6
3,616,519 - Shewana3_3010 0.44 +0.5
3,616,601 + Shewana3_3010 0.51 -1.6
3,616,601 + Shewana3_3010 0.51 +0.2
3,616,641 + Shewana3_3010 0.54 -2.8
3,617,052 + -0.0
3,617,160 + +0.0
3,617,474 - Shewana3_3011 0.16 -0.1
3,617,945 - Shewana3_3011 0.44 -0.7
3,618,048 + Shewana3_3011 0.50 -0.2
3,618,198 - Shewana3_3011 0.59 -1.5
3,618,330 - Shewana3_3011 0.67 -2.6
3,618,417 - Shewana3_3011 0.72 +0.0
3,618,417 - Shewana3_3011 0.72 -0.4
3,618,608 - Shewana3_3011 0.84 -1.2
3,618,704 - Shewana3_3011 0.89 +1.2
3,618,709 - Shewana3_3011 0.90 -0.6
3,619,844 + tyrA Shewana3_3012 0.66 +0.2

Or see this region's nucleotide sequence