Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3010 and Shewana3_3011 are separated by 51 nucleotides Shewana3_3011 and tyrA are separated by 216 nucleotides
Shewana3_3010: Shewana3_3010 - oxidoreductase FAD-binding subunit (RefSeq), at 3,616,021 to 3,617,163
_3010
Shewana3_3011: Shewana3_3011 - hydroxylamine reductase (RefSeq), at 3,617,215 to 3,618,879
_3011
Shewana3_3012: tyrA - bifunctional chorismate mutase/prephenate dehydrogenase (RefSeq), at 3,619,096 to 3,620,235
tyrA
Position (kb)
3617
3618
3619 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3616.431 kb on + strand, within Shewana3_3010 at 3616.519 kb on - strand, within Shewana3_3010 at 3616.601 kb on + strand, within Shewana3_3010 at 3616.601 kb on + strand, within Shewana3_3010 at 3616.641 kb on + strand, within Shewana3_3010 at 3617.052 kb on + strand at 3617.160 kb on + strand at 3617.474 kb on - strand, within Shewana3_3011 at 3617.945 kb on - strand, within Shewana3_3011 at 3618.048 kb on + strand, within Shewana3_3011 at 3618.198 kb on - strand, within Shewana3_3011 at 3618.330 kb on - strand, within Shewana3_3011 at 3618.417 kb on - strand, within Shewana3_3011 at 3618.417 kb on - strand, within Shewana3_3011 at 3618.608 kb on - strand, within Shewana3_3011 at 3618.704 kb on - strand, within Shewana3_3011 at 3618.709 kb on - strand, within Shewana3_3011 at 3619.844 kb on + strand, within tyrA
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,616,431 + Shewana3_3010 0.36 -0.6 3,616,519 - Shewana3_3010 0.44 +0.5 3,616,601 + Shewana3_3010 0.51 -1.6 3,616,601 + Shewana3_3010 0.51 +0.2 3,616,641 + Shewana3_3010 0.54 -2.8 3,617,052 + -0.0 3,617,160 + +0.0 3,617,474 - Shewana3_3011 0.16 -0.1 3,617,945 - Shewana3_3011 0.44 -0.7 3,618,048 + Shewana3_3011 0.50 -0.2 3,618,198 - Shewana3_3011 0.59 -1.5 3,618,330 - Shewana3_3011 0.67 -2.6 3,618,417 - Shewana3_3011 0.72 +0.0 3,618,417 - Shewana3_3011 0.72 -0.4 3,618,608 - Shewana3_3011 0.84 -1.2 3,618,704 - Shewana3_3011 0.89 +1.2 3,618,709 - Shewana3_3011 0.90 -0.6 3,619,844 + tyrA Shewana3_3012 0.66 +0.2
Or see this region's nucleotide sequence