Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2985 and Shewana3_2986 are separated by 361 nucleotides Shewana3_2986 and Shewana3_2987 are separated by 473 nucleotides
Shewana3_2985: Shewana3_2985 - ROK family protein (RefSeq), at 3,587,809 to 3,588,600
_2985
Shewana3_2986: Shewana3_2986 - peptidase M24 (RefSeq), at 3,588,962 to 3,590,776
_2986
Shewana3_2987: Shewana3_2987 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 3,591,250 to 3,592,818
_2987
Position (kb)
3588
3589
3590
3591 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3588.013 kb on - strand, within Shewana3_2985 at 3588.028 kb on + strand, within Shewana3_2985 at 3588.239 kb on - strand, within Shewana3_2985 at 3588.249 kb on - strand, within Shewana3_2985 at 3588.353 kb on - strand, within Shewana3_2985 at 3588.510 kb on - strand, within Shewana3_2985 at 3588.786 kb on - strand at 3588.863 kb on - strand at 3589.031 kb on + strand at 3589.116 kb on - strand at 3589.287 kb on + strand, within Shewana3_2986 at 3589.338 kb on + strand, within Shewana3_2986 at 3589.645 kb on + strand, within Shewana3_2986 at 3589.724 kb on + strand, within Shewana3_2986 at 3589.724 kb on + strand, within Shewana3_2986 at 3589.729 kb on + strand, within Shewana3_2986 at 3589.769 kb on + strand, within Shewana3_2986 at 3589.882 kb on + strand, within Shewana3_2986 at 3589.882 kb on + strand, within Shewana3_2986 at 3589.890 kb on - strand, within Shewana3_2986 at 3589.911 kb on + strand, within Shewana3_2986 at 3590.158 kb on + strand, within Shewana3_2986 at 3590.282 kb on + strand, within Shewana3_2986 at 3590.300 kb on - strand, within Shewana3_2986 at 3590.570 kb on + strand, within Shewana3_2986 at 3590.570 kb on + strand, within Shewana3_2986 at 3590.578 kb on - strand, within Shewana3_2986 at 3590.618 kb on - strand at 3590.680 kb on + strand at 3590.688 kb on - strand at 3590.704 kb on + strand at 3590.704 kb on + strand at 3590.766 kb on - strand at 3590.784 kb on - strand at 3590.807 kb on - strand at 3590.844 kb on - strand at 3591.256 kb on - strand at 3591.258 kb on + strand at 3591.263 kb on + strand at 3591.266 kb on - strand at 3591.304 kb on - strand at 3591.322 kb on + strand at 3591.467 kb on - strand, within Shewana3_2987 at 3591.613 kb on - strand, within Shewana3_2987 at 3591.637 kb on + strand, within Shewana3_2987 at 3591.745 kb on + strand, within Shewana3_2987 at 3591.774 kb on - strand, within Shewana3_2987
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,588,013 - Shewana3_2985 0.26 +0.7 3,588,028 + Shewana3_2985 0.28 +2.2 3,588,239 - Shewana3_2985 0.54 +0.4 3,588,249 - Shewana3_2985 0.56 +0.5 3,588,353 - Shewana3_2985 0.69 +0.4 3,588,510 - Shewana3_2985 0.89 +0.6 3,588,786 - -1.1 3,588,863 - +0.1 3,589,031 + -0.6 3,589,116 - -0.2 3,589,287 + Shewana3_2986 0.18 -0.8 3,589,338 + Shewana3_2986 0.21 +1.0 3,589,645 + Shewana3_2986 0.38 -0.4 3,589,724 + Shewana3_2986 0.42 +0.0 3,589,724 + Shewana3_2986 0.42 -0.1 3,589,729 + Shewana3_2986 0.42 +0.0 3,589,769 + Shewana3_2986 0.44 +1.1 3,589,882 + Shewana3_2986 0.51 -1.1 3,589,882 + Shewana3_2986 0.51 -0.8 3,589,890 - Shewana3_2986 0.51 -0.4 3,589,911 + Shewana3_2986 0.52 -0.8 3,590,158 + Shewana3_2986 0.66 +0.0 3,590,282 + Shewana3_2986 0.73 +0.5 3,590,300 - Shewana3_2986 0.74 -1.0 3,590,570 + Shewana3_2986 0.89 +1.0 3,590,570 + Shewana3_2986 0.89 +1.3 3,590,578 - Shewana3_2986 0.89 -1.4 3,590,618 - -2.0 3,590,680 + -1.2 3,590,688 - -1.1 3,590,704 + +0.6 3,590,704 + -0.4 3,590,766 - -2.5 3,590,784 - +0.3 3,590,807 - -1.5 3,590,844 - +0.1 3,591,256 - -0.3 3,591,258 + +0.3 3,591,263 + +0.4 3,591,266 - -0.5 3,591,304 - +1.0 3,591,322 + -2.7 3,591,467 - Shewana3_2987 0.14 -1.1 3,591,613 - Shewana3_2987 0.23 +1.8 3,591,637 + Shewana3_2987 0.25 -0.6 3,591,745 + Shewana3_2987 0.32 -0.8 3,591,774 - Shewana3_2987 0.33 -0.5
Or see this region's nucleotide sequence