Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2882 and Shewana3_2883 are separated by 140 nucleotides Shewana3_2883 and Shewana3_2884 are separated by 149 nucleotides
Shewana3_2882: Shewana3_2882 - peptidase M61 domain-containing protein (RefSeq), at 3,446,868 to 3,448,679
_2882
Shewana3_2883: Shewana3_2883 - TPR repeat-containing protein (RefSeq), at 3,448,820 to 3,450,982
_2883
Shewana3_2884: Shewana3_2884 - diguanylate cyclase (RefSeq), at 3,451,132 to 3,452,688
_2884
Position (kb)
3448
3449
3450
3451 Strain fitness (log2 ratio)
-2
-1
0
1 at 3447.860 kb on + strand, within Shewana3_2882 at 3447.949 kb on + strand, within Shewana3_2882 at 3447.972 kb on + strand, within Shewana3_2882 at 3448.038 kb on - strand, within Shewana3_2882 at 3448.077 kb on - strand, within Shewana3_2882 at 3448.145 kb on + strand, within Shewana3_2882 at 3448.342 kb on + strand, within Shewana3_2882 at 3448.413 kb on + strand, within Shewana3_2882 at 3448.443 kb on + strand, within Shewana3_2882 at 3448.558 kb on + strand at 3448.571 kb on - strand at 3448.616 kb on - strand at 3448.810 kb on - strand at 3448.820 kb on - strand at 3449.011 kb on - strand at 3449.014 kb on + strand at 3449.285 kb on - strand, within Shewana3_2883 at 3449.666 kb on - strand, within Shewana3_2883 at 3449.669 kb on - strand, within Shewana3_2883 at 3449.776 kb on - strand, within Shewana3_2883 at 3449.895 kb on - strand, within Shewana3_2883 at 3450.155 kb on - strand, within Shewana3_2883 at 3450.199 kb on - strand, within Shewana3_2883 at 3450.291 kb on - strand, within Shewana3_2883 at 3450.351 kb on + strand, within Shewana3_2883 at 3450.435 kb on - strand, within Shewana3_2883 at 3450.466 kb on + strand, within Shewana3_2883 at 3450.487 kb on + strand, within Shewana3_2883 at 3450.551 kb on - strand, within Shewana3_2883 at 3450.628 kb on - strand, within Shewana3_2883 at 3450.656 kb on + strand, within Shewana3_2883 at 3450.664 kb on - strand, within Shewana3_2883 at 3450.669 kb on + strand, within Shewana3_2883 at 3450.677 kb on - strand, within Shewana3_2883 at 3450.758 kb on + strand, within Shewana3_2883 at 3450.816 kb on - strand at 3451.273 kb on - strand at 3451.434 kb on + strand, within Shewana3_2884 at 3451.484 kb on - strand, within Shewana3_2884 at 3451.719 kb on - strand, within Shewana3_2884 at 3451.726 kb on + strand, within Shewana3_2884 at 3451.731 kb on + strand, within Shewana3_2884 at 3451.928 kb on - strand, within Shewana3_2884
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,447,860 + Shewana3_2882 0.55 +0.7 3,447,949 + Shewana3_2882 0.60 -0.2 3,447,972 + Shewana3_2882 0.61 -1.2 3,448,038 - Shewana3_2882 0.65 -0.2 3,448,077 - Shewana3_2882 0.67 -0.8 3,448,145 + Shewana3_2882 0.70 +0.1 3,448,342 + Shewana3_2882 0.81 +0.0 3,448,413 + Shewana3_2882 0.85 -0.1 3,448,443 + Shewana3_2882 0.87 -1.7 3,448,558 + +0.0 3,448,571 - +0.6 3,448,616 - +0.0 3,448,810 - -0.3 3,448,820 - +0.5 3,449,011 - +0.0 3,449,014 + -2.7 3,449,285 - Shewana3_2883 0.21 +1.3 3,449,666 - Shewana3_2883 0.39 -1.4 3,449,669 - Shewana3_2883 0.39 -0.3 3,449,776 - Shewana3_2883 0.44 +0.8 3,449,895 - Shewana3_2883 0.50 +0.1 3,450,155 - Shewana3_2883 0.62 -0.9 3,450,199 - Shewana3_2883 0.64 +0.2 3,450,291 - Shewana3_2883 0.68 -1.9 3,450,351 + Shewana3_2883 0.71 +0.5 3,450,435 - Shewana3_2883 0.75 -0.8 3,450,466 + Shewana3_2883 0.76 +1.3 3,450,487 + Shewana3_2883 0.77 +0.5 3,450,551 - Shewana3_2883 0.80 -0.4 3,450,628 - Shewana3_2883 0.84 -1.7 3,450,656 + Shewana3_2883 0.85 -1.4 3,450,664 - Shewana3_2883 0.85 -0.5 3,450,669 + Shewana3_2883 0.85 -0.7 3,450,677 - Shewana3_2883 0.86 -2.4 3,450,758 + Shewana3_2883 0.90 -1.7 3,450,816 - -1.2 3,451,273 - +0.5 3,451,434 + Shewana3_2884 0.19 -1.5 3,451,484 - Shewana3_2884 0.23 +0.3 3,451,719 - Shewana3_2884 0.38 +0.3 3,451,726 + Shewana3_2884 0.38 -1.7 3,451,731 + Shewana3_2884 0.38 -0.8 3,451,928 - Shewana3_2884 0.51 -1.0
Or see this region's nucleotide sequence