Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2791 and Shewana3_2792 overlap by 11 nucleotides Shewana3_2792 and Shewana3_2793 are separated by 61 nucleotides Shewana3_2793 and Shewana3_2794 are separated by 37 nucleotides Shewana3_2794 and Shewana3_2795 are separated by 74 nucleotides
Shewana3_2791: Shewana3_2791 - 3'(2'),5'-bisphosphate nucleotidase (RefSeq), at 3,330,984 to 3,331,790
_2791
Shewana3_2792: Shewana3_2792 - hypothetical protein (RefSeq), at 3,331,780 to 3,332,076
_2792
Shewana3_2793: Shewana3_2793 - dTDP-4-dehydrorhamnose reductase (RefSeq), at 3,332,138 to 3,333,232
_2793
Shewana3_2794: Shewana3_2794 - putative hydrolase (RefSeq), at 3,333,270 to 3,334,028
_2794
Shewana3_2795: Shewana3_2795 - SNF2-related protein (RefSeq), at 3,334,103 to 3,337,351
_2795
Position (kb)
3332
3333
3334 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3331.165 kb on + strand, within Shewana3_2791 at 3331.173 kb on - strand, within Shewana3_2791 at 3331.916 kb on - strand, within Shewana3_2792 at 3332.130 kb on + strand at 3332.180 kb on - strand at 3332.211 kb on - strand at 3332.245 kb on - strand at 3332.278 kb on + strand, within Shewana3_2793 at 3332.431 kb on + strand, within Shewana3_2793 at 3332.639 kb on - strand, within Shewana3_2793 at 3332.644 kb on - strand, within Shewana3_2793 at 3332.653 kb on + strand, within Shewana3_2793 at 3332.688 kb on + strand, within Shewana3_2793 at 3332.732 kb on - strand, within Shewana3_2793 at 3332.809 kb on + strand, within Shewana3_2793 at 3332.935 kb on + strand, within Shewana3_2793 at 3332.966 kb on - strand, within Shewana3_2793 at 3333.079 kb on + strand, within Shewana3_2793 at 3333.093 kb on - strand, within Shewana3_2793 at 3333.137 kb on + strand at 3333.156 kb on + strand at 3333.185 kb on + strand at 3333.321 kb on - strand at 3333.337 kb on + strand at 3333.469 kb on - strand, within Shewana3_2794 at 3334.009 kb on - strand at 3334.023 kb on - strand at 3334.043 kb on - strand at 3334.043 kb on - strand at 3334.068 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,331,165 + Shewana3_2791 0.22 -1.1 3,331,173 - Shewana3_2791 0.23 +0.2 3,331,916 - Shewana3_2792 0.46 -2.9 3,332,130 + -1.3 3,332,180 - -1.1 3,332,211 - -0.7 3,332,245 - -2.4 3,332,278 + Shewana3_2793 0.13 +0.9 3,332,431 + Shewana3_2793 0.27 +1.4 3,332,639 - Shewana3_2793 0.46 -1.6 3,332,644 - Shewana3_2793 0.46 -2.1 3,332,653 + Shewana3_2793 0.47 +0.1 3,332,688 + Shewana3_2793 0.50 +0.4 3,332,732 - Shewana3_2793 0.54 -2.0 3,332,809 + Shewana3_2793 0.61 +0.0 3,332,935 + Shewana3_2793 0.73 -1.3 3,332,966 - Shewana3_2793 0.76 -0.2 3,333,079 + Shewana3_2793 0.86 +1.4 3,333,093 - Shewana3_2793 0.87 +0.6 3,333,137 + +1.7 3,333,156 + -0.4 3,333,185 + -1.3 3,333,321 - +0.0 3,333,337 + +0.8 3,333,469 - Shewana3_2794 0.26 -0.8 3,334,009 - -1.8 3,334,023 - -1.6 3,334,043 - +0.4 3,334,043 - -0.4 3,334,068 - +0.0
Or see this region's nucleotide sequence