Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2764 and fabG are separated by 207 nucleotides fabG and Shewana3_2766 are separated by 19 nucleotides Shewana3_2766 and Shewana3_2767 are separated by 100 nucleotides
Shewana3_2764: Shewana3_2764 - hypothetical protein (RefSeq), at 3,303,121 to 3,303,363
_2764
Shewana3_2765: fabG - 3-ketoacyl-(acyl-carrier-protein) reductase (RefSeq), at 3,303,571 to 3,304,329
fabG
Shewana3_2766: Shewana3_2766 - 3-hydroxyisobutyrate dehydrogenase (RefSeq), at 3,304,349 to 3,305,251
_2766
Shewana3_2767: Shewana3_2767 - enoyl-CoA hydratase/isomerase (RefSeq), at 3,305,352 to 3,306,503
_2767
Position (kb)
3304
3305
3306 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3303.392 kb on - strand at 3303.642 kb on + strand at 3303.750 kb on + strand, within fabG at 3303.758 kb on - strand, within fabG at 3304.841 kb on + strand, within Shewana3_2766 at 3304.849 kb on - strand, within Shewana3_2766 at 3304.907 kb on + strand, within Shewana3_2766 at 3304.908 kb on + strand, within Shewana3_2766 at 3304.980 kb on - strand, within Shewana3_2766 at 3305.067 kb on - strand, within Shewana3_2766 at 3305.110 kb on + strand, within Shewana3_2766 at 3305.143 kb on - strand, within Shewana3_2766 at 3305.247 kb on - strand at 3305.416 kb on - strand at 3305.471 kb on - strand, within Shewana3_2767 at 3305.510 kb on + strand, within Shewana3_2767 at 3305.675 kb on - strand, within Shewana3_2767 at 3305.704 kb on - strand, within Shewana3_2767 at 3305.873 kb on - strand, within Shewana3_2767 at 3305.978 kb on + strand, within Shewana3_2767 at 3305.986 kb on - strand, within Shewana3_2767 at 3306.124 kb on + strand, within Shewana3_2767 at 3306.124 kb on + strand, within Shewana3_2767
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,303,392 - +1.5 3,303,642 + +0.9 3,303,750 + fabG Shewana3_2765 0.24 +0.9 3,303,758 - fabG Shewana3_2765 0.25 +1.5 3,304,841 + Shewana3_2766 0.54 +0.1 3,304,849 - Shewana3_2766 0.55 +1.2 3,304,907 + Shewana3_2766 0.62 -0.3 3,304,908 + Shewana3_2766 0.62 -1.8 3,304,980 - Shewana3_2766 0.70 +0.7 3,305,067 - Shewana3_2766 0.80 +0.3 3,305,110 + Shewana3_2766 0.84 -0.7 3,305,143 - Shewana3_2766 0.88 +1.5 3,305,247 - -0.0 3,305,416 - +1.7 3,305,471 - Shewana3_2767 0.10 +0.9 3,305,510 + Shewana3_2767 0.14 +0.2 3,305,675 - Shewana3_2767 0.28 +1.2 3,305,704 - Shewana3_2767 0.31 +1.9 3,305,873 - Shewana3_2767 0.45 +0.6 3,305,978 + Shewana3_2767 0.54 -2.2 3,305,986 - Shewana3_2767 0.55 +1.0 3,306,124 + Shewana3_2767 0.67 -0.7 3,306,124 + Shewana3_2767 0.67 +2.5
Or see this region's nucleotide sequence