Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2761 and Shewana3_2762 are separated by 136 nucleotides Shewana3_2762 and Shewana3_2763 are separated by 102 nucleotides
Shewana3_2761: Shewana3_2761 - copper-translocating P-type ATPase (RefSeq), at 3,298,139 to 3,300,400
_2761
Shewana3_2762: Shewana3_2762 - MerR family transcriptional regulator (RefSeq), at 3,300,537 to 3,300,926
_2762
Shewana3_2763: Shewana3_2763 - peptidase S9 prolyl oligopeptidase (RefSeq), at 3,301,029 to 3,303,062
_2763
Position (kb)
3300
3301 Strain fitness (log2 ratio)
-2
-1
0
1 at 3299.582 kb on - strand, within Shewana3_2761 at 3299.628 kb on + strand, within Shewana3_2761 at 3299.645 kb on + strand, within Shewana3_2761 at 3299.664 kb on + strand, within Shewana3_2761 at 3299.838 kb on - strand, within Shewana3_2761 at 3299.887 kb on + strand, within Shewana3_2761 at 3299.887 kb on + strand, within Shewana3_2761 at 3299.900 kb on - strand, within Shewana3_2761 at 3299.900 kb on - strand, within Shewana3_2761 at 3299.900 kb on - strand, within Shewana3_2761 at 3299.997 kb on - strand, within Shewana3_2761 at 3300.509 kb on + strand at 3300.567 kb on + strand at 3300.567 kb on + strand at 3300.575 kb on - strand at 3300.619 kb on - strand, within Shewana3_2762 at 3301.138 kb on + strand at 3301.146 kb on - strand at 3301.258 kb on - strand, within Shewana3_2763 at 3301.530 kb on + strand, within Shewana3_2763 at 3301.542 kb on + strand, within Shewana3_2763 at 3301.542 kb on + strand, within Shewana3_2763 at 3301.632 kb on + strand, within Shewana3_2763 at 3301.721 kb on - strand, within Shewana3_2763 at 3301.748 kb on + strand, within Shewana3_2763 at 3301.888 kb on + strand, within Shewana3_2763 at 3301.913 kb on - strand, within Shewana3_2763
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,299,582 - Shewana3_2761 0.64 +0.3 3,299,628 + Shewana3_2761 0.66 -0.7 3,299,645 + Shewana3_2761 0.67 -0.1 3,299,664 + Shewana3_2761 0.67 -1.4 3,299,838 - Shewana3_2761 0.75 +0.8 3,299,887 + Shewana3_2761 0.77 +0.5 3,299,887 + Shewana3_2761 0.77 +0.9 3,299,900 - Shewana3_2761 0.78 +0.3 3,299,900 - Shewana3_2761 0.78 -0.3 3,299,900 - Shewana3_2761 0.78 +0.9 3,299,997 - Shewana3_2761 0.82 -0.1 3,300,509 + -1.2 3,300,567 + +0.6 3,300,567 + +0.8 3,300,575 - -0.7 3,300,619 - Shewana3_2762 0.21 +0.5 3,301,138 + -0.8 3,301,146 - +0.4 3,301,258 - Shewana3_2763 0.11 +0.1 3,301,530 + Shewana3_2763 0.25 -0.3 3,301,542 + Shewana3_2763 0.25 -0.7 3,301,542 + Shewana3_2763 0.25 -0.1 3,301,632 + Shewana3_2763 0.30 -0.1 3,301,721 - Shewana3_2763 0.34 -2.1 3,301,748 + Shewana3_2763 0.35 -1.0 3,301,888 + Shewana3_2763 0.42 +1.5 3,301,913 - Shewana3_2763 0.43 +0.4
Or see this region's nucleotide sequence