Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2669

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2668 and Shewana3_2669 are separated by 209 nucleotidesShewana3_2669 and Shewana3_2670 are separated by 183 nucleotides Shewana3_2668: Shewana3_2668 - hypothetical protein (RefSeq), at 3,184,697 to 3,185,293 _2668 Shewana3_2669: Shewana3_2669 - glutaminyl-tRNA synthetase (RefSeq), at 3,185,503 to 3,187,173 _2669 Shewana3_2670: Shewana3_2670 - ferrous iron transport protein B (RefSeq), at 3,187,357 to 3,189,651 _2670 Position (kb) 3185 3186 3187 3188Strain fitness (log2 ratio) -1 0 1at 3184.553 kb on - strandat 3184.599 kb on - strandat 3184.610 kb on - strandat 3184.728 kb on - strandat 3184.892 kb on + strand, within Shewana3_2668at 3184.987 kb on - strand, within Shewana3_2668at 3185.037 kb on + strand, within Shewana3_2668at 3185.147 kb on + strand, within Shewana3_2668at 3187.260 kb on - strandat 3187.863 kb on - strand, within Shewana3_2670

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,184,553 - +0.6
3,184,599 - +1.3
3,184,610 - -1.6
3,184,728 - +1.6
3,184,892 + Shewana3_2668 0.33 -1.4
3,184,987 - Shewana3_2668 0.49 +1.6
3,185,037 + Shewana3_2668 0.57 +0.6
3,185,147 + Shewana3_2668 0.75 -0.4
3,187,260 - +1.2
3,187,863 - Shewana3_2670 0.22 +1.0

Or see this region's nucleotide sequence