Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2608 and Shewana3_2609 are separated by 125 nucleotides Shewana3_2609 and Shewana3_2610 are separated by 351 nucleotides Shewana3_2610 and Shewana3_2611 are separated by 266 nucleotides
Shewana3_2608: Shewana3_2608 - hypothetical protein (RefSeq), at 3,112,562 to 3,113,071
_2608
Shewana3_2609: Shewana3_2609 - hypothetical protein (RefSeq), at 3,113,197 to 3,113,655
_2609
Shewana3_2610: Shewana3_2610 - peptidase M23B (RefSeq), at 3,114,007 to 3,115,302
_2610
Shewana3_2611: Shewana3_2611 - exonuclease SbcC, putative (RefSeq), at 3,115,569 to 3,118,625
_2611
Position (kb)
3114
3115
3116 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3113.371 kb on + strand, within Shewana3_2609 at 3113.583 kb on + strand, within Shewana3_2609 at 3113.760 kb on - strand at 3113.840 kb on - strand at 3113.911 kb on - strand at 3113.921 kb on + strand at 3113.931 kb on - strand at 3114.501 kb on - strand, within Shewana3_2610 at 3115.490 kb on - strand at 3115.726 kb on - strand at 3115.815 kb on + strand at 3115.815 kb on + strand at 3115.887 kb on + strand, within Shewana3_2611 at 3116.218 kb on + strand, within Shewana3_2611 at 3116.218 kb on + strand, within Shewana3_2611 at 3116.226 kb on - strand, within Shewana3_2611 at 3116.291 kb on + strand, within Shewana3_2611
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,113,371 + Shewana3_2609 0.38 -0.9 3,113,583 + Shewana3_2609 0.84 +0.5 3,113,760 - +1.1 3,113,840 - +2.6 3,113,911 - +0.3 3,113,921 + -0.2 3,113,931 - +1.6 3,114,501 - Shewana3_2610 0.38 +0.6 3,115,490 - +0.6 3,115,726 - -1.8 3,115,815 + +0.6 3,115,815 + +1.6 3,115,887 + Shewana3_2611 0.10 -1.1 3,116,218 + Shewana3_2611 0.21 +0.7 3,116,218 + Shewana3_2611 0.21 +0.3 3,116,226 - Shewana3_2611 0.21 +1.6 3,116,291 + Shewana3_2611 0.24 +1.4
Or see this region's nucleotide sequence