Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2458

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2457 and Shewana3_2458 are separated by 261 nucleotidesShewana3_2458 and Shewana3_2459 are separated by 208 nucleotides Shewana3_2457: Shewana3_2457 - peptidase M1, membrane alanine aminopeptidase (RefSeq), at 2,945,191 to 2,947,119 _2457 Shewana3_2458: Shewana3_2458 - peptidylprolyl isomerase, FKBP-type (RefSeq), at 2,947,381 to 2,947,869 _2458 Shewana3_2459: Shewana3_2459 - lytic murein transglycosylase (RefSeq), at 2,948,078 to 2,949,370 _2459 Position (kb) 2947 2948Strain fitness (log2 ratio) -1 0 1 2at 2946.384 kb on - strand, within Shewana3_2457at 2946.489 kb on + strand, within Shewana3_2457at 2946.750 kb on + strand, within Shewana3_2457at 2946.758 kb on - strand, within Shewana3_2457at 2946.758 kb on - strand, within Shewana3_2457at 2947.014 kb on - strandat 2947.054 kb on - strandat 2947.056 kb on + strandat 2947.379 kb on + strandat 2947.379 kb on + strandat 2947.387 kb on - strandat 2947.466 kb on - strand, within Shewana3_2458at 2947.684 kb on - strand, within Shewana3_2458at 2947.840 kb on - strandat 2947.847 kb on + strandat 2947.922 kb on - strandat 2947.941 kb on + strandat 2948.105 kb on - strandat 2948.165 kb on - strandat 2948.165 kb on - strandat 2948.254 kb on + strand, within Shewana3_2459at 2948.432 kb on - strand, within Shewana3_2459at 2948.687 kb on + strand, within Shewana3_2459at 2948.710 kb on - strand, within Shewana3_2459at 2948.760 kb on - strand, within Shewana3_2459at 2948.843 kb on + strand, within Shewana3_2459at 2948.843 kb on + strand, within Shewana3_2459

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,946,384 - Shewana3_2457 0.62 +1.2
2,946,489 + Shewana3_2457 0.67 +0.1
2,946,750 + Shewana3_2457 0.81 +0.4
2,946,758 - Shewana3_2457 0.81 +1.7
2,946,758 - Shewana3_2457 0.81 +1.7
2,947,014 - +2.7
2,947,054 - -0.4
2,947,056 + +0.0
2,947,379 + -0.6
2,947,379 + +0.4
2,947,387 - +1.3
2,947,466 - Shewana3_2458 0.17 +0.5
2,947,684 - Shewana3_2458 0.62 +1.2
2,947,840 - -0.5
2,947,847 + +0.4
2,947,922 - +0.5
2,947,941 + +0.1
2,948,105 - +1.7
2,948,165 - +0.3
2,948,165 - +0.9
2,948,254 + Shewana3_2459 0.14 +0.5
2,948,432 - Shewana3_2459 0.27 +1.4
2,948,687 + Shewana3_2459 0.47 +2.3
2,948,710 - Shewana3_2459 0.49 +1.1
2,948,760 - Shewana3_2459 0.53 +0.2
2,948,843 + Shewana3_2459 0.59 +0.4
2,948,843 + Shewana3_2459 0.59 -1.5

Or see this region's nucleotide sequence