Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2391

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2389 and Shewana3_2390 overlap by 8 nucleotidesShewana3_2390 and Shewana3_2391 are separated by 142 nucleotidesShewana3_2391 and Shewana3_2392 are separated by 376 nucleotides Shewana3_2389: Shewana3_2389 - hypothetical protein (RefSeq), at 2,868,616 to 2,869,323 _2389 Shewana3_2390: Shewana3_2390 - hypothetical protein (RefSeq), at 2,869,316 to 2,869,624 _2390 Shewana3_2391: Shewana3_2391 - peptidase M22, glycoprotease (RefSeq), at 2,869,767 to 2,870,477 _2391 Shewana3_2392: Shewana3_2392 - delta-aminolevulinic acid dehydratase (RefSeq), at 2,870,854 to 2,871,852 _2392 Position (kb) 2869 2870 2871Strain fitness (log2 ratio) -1 0 1 2 3at 2868.804 kb on + strand, within Shewana3_2389at 2868.872 kb on + strand, within Shewana3_2389at 2868.919 kb on + strand, within Shewana3_2389at 2868.927 kb on - strand, within Shewana3_2389at 2869.063 kb on + strand, within Shewana3_2389at 2869.149 kb on + strand, within Shewana3_2389at 2869.400 kb on + strand, within Shewana3_2390at 2869.472 kb on + strand, within Shewana3_2390at 2869.653 kb on - strandat 2870.536 kb on - strandat 2870.541 kb on - strandat 2870.662 kb on + strandat 2871.133 kb on + strand, within Shewana3_2392at 2871.171 kb on - strand, within Shewana3_2392at 2871.251 kb on + strand, within Shewana3_2392at 2871.276 kb on - strand, within Shewana3_2392at 2871.350 kb on - strand, within Shewana3_2392at 2871.395 kb on - strand, within Shewana3_2392at 2871.395 kb on - strand, within Shewana3_2392

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
2,868,804 + Shewana3_2389 0.27 -0.2
2,868,872 + Shewana3_2389 0.36 -0.7
2,868,919 + Shewana3_2389 0.43 -0.5
2,868,927 - Shewana3_2389 0.44 +1.2
2,869,063 + Shewana3_2389 0.63 +1.0
2,869,149 + Shewana3_2389 0.75 +1.2
2,869,400 + Shewana3_2390 0.27 -0.4
2,869,472 + Shewana3_2390 0.50 -1.6
2,869,653 - +0.5
2,870,536 - +1.0
2,870,541 - +1.1
2,870,662 + +0.4
2,871,133 + Shewana3_2392 0.28 +0.9
2,871,171 - Shewana3_2392 0.32 +2.8
2,871,251 + Shewana3_2392 0.40 +0.2
2,871,276 - Shewana3_2392 0.42 -0.2
2,871,350 - Shewana3_2392 0.50 +0.5
2,871,395 - Shewana3_2392 0.54 -0.2
2,871,395 - Shewana3_2392 0.54 +0.5

Or see this region's nucleotide sequence