Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2378 and Shewana3_2379 are separated by 167 nucleotides Shewana3_2379 and Shewana3_2380 are separated by 38 nucleotides
Shewana3_2378: Shewana3_2378 - iron-containing alcohol dehydrogenase (RefSeq), at 2,858,100 to 2,859,713
_2378
Shewana3_2379: Shewana3_2379 - hypothetical protein (RefSeq), at 2,859,881 to 2,860,339
_2379
Shewana3_2380: Shewana3_2380 - putative transglycosylase (RefSeq), at 2,860,378 to 2,861,379
_2380
Position (kb)
2859
2860
2861 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2859.793 kb on + strand at 2859.988 kb on - strand, within Shewana3_2379 at 2860.140 kb on + strand, within Shewana3_2379 at 2860.148 kb on - strand, within Shewana3_2379 at 2860.215 kb on - strand, within Shewana3_2379 at 2860.254 kb on + strand, within Shewana3_2379 at 2860.453 kb on - strand at 2860.589 kb on - strand, within Shewana3_2380 at 2860.589 kb on - strand, within Shewana3_2380 at 2860.737 kb on - strand, within Shewana3_2380 at 2860.754 kb on - strand, within Shewana3_2380 at 2860.930 kb on + strand, within Shewana3_2380 at 2860.968 kb on + strand at 2860.976 kb on - strand, within Shewana3_2380 at 2860.976 kb on - strand, within Shewana3_2380 at 2860.976 kb on - strand, within Shewana3_2380 at 2860.976 kb on - strand, within Shewana3_2380 at 2860.976 kb on - strand, within Shewana3_2380 at 2860.988 kb on - strand, within Shewana3_2380 at 2861.250 kb on - strand, within Shewana3_2380 at 2861.267 kb on + strand, within Shewana3_2380 at 2861.275 kb on - strand, within Shewana3_2380
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,859,793 + +0.3 2,859,988 - Shewana3_2379 0.23 +1.2 2,860,140 + Shewana3_2379 0.56 +0.6 2,860,148 - Shewana3_2379 0.58 -0.5 2,860,215 - Shewana3_2379 0.73 -0.1 2,860,254 + Shewana3_2379 0.81 +0.6 2,860,453 - -1.0 2,860,589 - Shewana3_2380 0.21 +0.1 2,860,589 - Shewana3_2380 0.21 -2.4 2,860,737 - Shewana3_2380 0.36 -0.0 2,860,754 - Shewana3_2380 0.38 +0.5 2,860,930 + Shewana3_2380 0.55 +1.9 2,860,968 + +2.9 2,860,976 - Shewana3_2380 0.60 +0.3 2,860,976 - Shewana3_2380 0.60 +1.0 2,860,976 - Shewana3_2380 0.60 +0.8 2,860,976 - Shewana3_2380 0.60 +0.4 2,860,976 - Shewana3_2380 0.60 -0.9 2,860,988 - Shewana3_2380 0.61 +0.2 2,861,250 - Shewana3_2380 0.87 -0.7 2,861,267 + Shewana3_2380 0.89 +1.9 2,861,275 - Shewana3_2380 0.90 -0.3
Or see this region's nucleotide sequence