Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2373

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2372 and Shewana3_2373 are separated by 42 nucleotidesShewana3_2373 and Shewana3_2374 are separated by 219 nucleotidesShewana3_2374 and Shewana3_2375 are separated by 203 nucleotides Shewana3_2372: Shewana3_2372 - AsmA protein (RefSeq), at 2,850,685 to 2,852,505 _2372 Shewana3_2373: Shewana3_2373 - ribonuclease activity regulator protein RraA (RefSeq), at 2,852,548 to 2,853,042 _2373 Shewana3_2374: Shewana3_2374 - hypothetical protein (RefSeq), at 2,853,262 to 2,853,582 _2374 Shewana3_2375: Shewana3_2375 - putative lipoprotein (RefSeq), at 2,853,786 to 2,855,576 _2375 Position (kb) 2852 2853 2854Strain fitness (log2 ratio) -2 -1 0 1 2at 2851.898 kb on + strand, within Shewana3_2372at 2851.921 kb on + strand, within Shewana3_2372at 2852.049 kb on + strand, within Shewana3_2372at 2852.186 kb on - strand, within Shewana3_2372at 2852.267 kb on + strand, within Shewana3_2372at 2852.367 kb on + strandat 2852.376 kb on - strandat 2852.442 kb on + strandat 2852.442 kb on + strandat 2852.468 kb on - strandat 2852.468 kb on - strandat 2852.594 kb on - strandat 2852.594 kb on - strandat 2852.697 kb on + strand, within Shewana3_2373at 2852.719 kb on - strand, within Shewana3_2373at 2852.794 kb on - strand, within Shewana3_2373at 2852.997 kb on + strandat 2853.100 kb on - strandat 2853.208 kb on - strandat 2853.461 kb on + strand, within Shewana3_2374at 2853.730 kb on + strandat 2853.745 kb on + strandat 2853.752 kb on - strandat 2853.752 kb on - strandat 2853.766 kb on + strandat 2853.774 kb on - strandat 2853.774 kb on - strandat 2853.791 kb on + strandat 2853.832 kb on - strandat 2853.899 kb on - strandat 2853.965 kb on - strand, within Shewana3_2375at 2853.975 kb on + strand, within Shewana3_2375at 2854.025 kb on + strand, within Shewana3_2375

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,851,898 + Shewana3_2372 0.67 -1.0
2,851,921 + Shewana3_2372 0.68 +0.1
2,852,049 + Shewana3_2372 0.75 -0.1
2,852,186 - Shewana3_2372 0.82 -1.8
2,852,267 + Shewana3_2372 0.87 +1.9
2,852,367 + -1.7
2,852,376 - -0.4
2,852,442 + +1.9
2,852,442 + +1.9
2,852,468 - -0.5
2,852,468 - +0.9
2,852,594 - +1.1
2,852,594 - +0.1
2,852,697 + Shewana3_2373 0.30 +0.3
2,852,719 - Shewana3_2373 0.35 +1.1
2,852,794 - Shewana3_2373 0.50 +1.1
2,852,997 + +1.9
2,853,100 - -1.6
2,853,208 - -0.0
2,853,461 + Shewana3_2374 0.62 -1.3
2,853,730 + +0.2
2,853,745 + +1.2
2,853,752 - +0.6
2,853,752 - +1.3
2,853,766 + -0.4
2,853,774 - -0.4
2,853,774 - +1.4
2,853,791 + +0.6
2,853,832 - +0.6
2,853,899 - +1.1
2,853,965 - Shewana3_2375 0.10 +1.5
2,853,975 + Shewana3_2375 0.11 +1.9
2,854,025 + Shewana3_2375 0.13 +1.9

Or see this region's nucleotide sequence