Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2372 and Shewana3_2373 are separated by 42 nucleotides Shewana3_2373 and Shewana3_2374 are separated by 219 nucleotides Shewana3_2374 and Shewana3_2375 are separated by 203 nucleotides
Shewana3_2372: Shewana3_2372 - AsmA protein (RefSeq), at 2,850,685 to 2,852,505
_2372
Shewana3_2373: Shewana3_2373 - ribonuclease activity regulator protein RraA (RefSeq), at 2,852,548 to 2,853,042
_2373
Shewana3_2374: Shewana3_2374 - hypothetical protein (RefSeq), at 2,853,262 to 2,853,582
_2374
Shewana3_2375: Shewana3_2375 - putative lipoprotein (RefSeq), at 2,853,786 to 2,855,576
_2375
Position (kb)
2852
2853
2854 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2851.898 kb on + strand, within Shewana3_2372 at 2851.921 kb on + strand, within Shewana3_2372 at 2852.049 kb on + strand, within Shewana3_2372 at 2852.186 kb on - strand, within Shewana3_2372 at 2852.267 kb on + strand, within Shewana3_2372 at 2852.367 kb on + strand at 2852.376 kb on - strand at 2852.442 kb on + strand at 2852.442 kb on + strand at 2852.468 kb on - strand at 2852.468 kb on - strand at 2852.594 kb on - strand at 2852.594 kb on - strand at 2852.697 kb on + strand, within Shewana3_2373 at 2852.719 kb on - strand, within Shewana3_2373 at 2852.794 kb on - strand, within Shewana3_2373 at 2852.997 kb on + strand at 2853.100 kb on - strand at 2853.208 kb on - strand at 2853.461 kb on + strand, within Shewana3_2374 at 2853.730 kb on + strand at 2853.745 kb on + strand at 2853.752 kb on - strand at 2853.752 kb on - strand at 2853.766 kb on + strand at 2853.774 kb on - strand at 2853.774 kb on - strand at 2853.791 kb on + strand at 2853.832 kb on - strand at 2853.899 kb on - strand at 2853.965 kb on - strand, within Shewana3_2375 at 2853.975 kb on + strand, within Shewana3_2375 at 2854.025 kb on + strand, within Shewana3_2375
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,851,898 + Shewana3_2372 0.67 -1.0 2,851,921 + Shewana3_2372 0.68 +0.1 2,852,049 + Shewana3_2372 0.75 -0.1 2,852,186 - Shewana3_2372 0.82 -1.8 2,852,267 + Shewana3_2372 0.87 +1.9 2,852,367 + -1.7 2,852,376 - -0.4 2,852,442 + +1.9 2,852,442 + +1.9 2,852,468 - -0.5 2,852,468 - +0.9 2,852,594 - +1.1 2,852,594 - +0.1 2,852,697 + Shewana3_2373 0.30 +0.3 2,852,719 - Shewana3_2373 0.35 +1.1 2,852,794 - Shewana3_2373 0.50 +1.1 2,852,997 + +1.9 2,853,100 - -1.6 2,853,208 - -0.0 2,853,461 + Shewana3_2374 0.62 -1.3 2,853,730 + +0.2 2,853,745 + +1.2 2,853,752 - +0.6 2,853,752 - +1.3 2,853,766 + -0.4 2,853,774 - -0.4 2,853,774 - +1.4 2,853,791 + +0.6 2,853,832 - +0.6 2,853,899 - +1.1 2,853,965 - Shewana3_2375 0.10 +1.5 2,853,975 + Shewana3_2375 0.11 +1.9 2,854,025 + Shewana3_2375 0.13 +1.9
Or see this region's nucleotide sequence