Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2356

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2354 and Shewana3_2355 are separated by 12 nucleotidesShewana3_2355 and Shewana3_2356 overlap by 4 nucleotidesShewana3_2356 and Shewana3_2357 are separated by 9 nucleotidesShewana3_2357 and Shewana3_2358 are separated by 155 nucleotidesShewana3_2358 and Shewana3_2359 are separated by 78 nucleotides Shewana3_2354: Shewana3_2354 - phage integrase family protein (RefSeq), at 2,831,908 to 2,835,000 _2354 Shewana3_2355: Shewana3_2355 - metal dependent phosphohydrolase (RefSeq), at 2,835,013 to 2,835,888 _2355 Shewana3_2356: Shewana3_2356 - phage integrase family protein (RefSeq), at 2,835,885 to 2,837,063 _2356 Shewana3_2357: Shewana3_2357 - hypothetical protein (RefSeq), at 2,837,073 to 2,837,285 _2357 Shewana3_2358: Shewana3_2358 - hypothetical protein (RefSeq), at 2,837,441 to 2,837,677 _2358 Shewana3_2359: Shewana3_2359 - transposase IS3/IS911 family protein (RefSeq), at 2,837,756 to 2,838,001 _2359 Position (kb) 2835 2836 2837 2838Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2835.167 kb on - strand, within Shewana3_2355at 2835.240 kb on - strand, within Shewana3_2355at 2835.713 kb on - strand, within Shewana3_2355at 2835.786 kb on + strand, within Shewana3_2355at 2835.786 kb on + strand, within Shewana3_2355at 2835.789 kb on - strand, within Shewana3_2355at 2835.794 kb on - strand, within Shewana3_2355at 2835.950 kb on - strandat 2836.040 kb on + strand, within Shewana3_2356at 2836.126 kb on - strand, within Shewana3_2356at 2836.270 kb on + strand, within Shewana3_2356at 2836.297 kb on - strand, within Shewana3_2356at 2836.297 kb on - strand, within Shewana3_2356at 2836.367 kb on - strand, within Shewana3_2356at 2836.391 kb on - strand, within Shewana3_2356at 2836.416 kb on - strand, within Shewana3_2356at 2836.438 kb on - strand, within Shewana3_2356at 2836.689 kb on - strand, within Shewana3_2356at 2836.986 kb on + strandat 2837.069 kb on - strandat 2837.134 kb on - strand, within Shewana3_2357at 2837.207 kb on + strand, within Shewana3_2357at 2837.259 kb on + strand, within Shewana3_2357at 2837.754 kb on - strandat 2837.874 kb on + strand, within Shewana3_2359at 2837.936 kb on - strand, within Shewana3_2359

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,835,167 - Shewana3_2355 0.18 -1.2
2,835,240 - Shewana3_2355 0.26 +0.6
2,835,713 - Shewana3_2355 0.80 -2.3
2,835,786 + Shewana3_2355 0.88 +0.3
2,835,786 + Shewana3_2355 0.88 +1.3
2,835,789 - Shewana3_2355 0.89 +0.9
2,835,794 - Shewana3_2355 0.89 +0.4
2,835,950 - -2.2
2,836,040 + Shewana3_2356 0.13 +2.9
2,836,126 - Shewana3_2356 0.20 +0.9
2,836,270 + Shewana3_2356 0.33 +0.6
2,836,297 - Shewana3_2356 0.35 -2.4
2,836,297 - Shewana3_2356 0.35 -0.8
2,836,367 - Shewana3_2356 0.41 -1.0
2,836,391 - Shewana3_2356 0.43 -0.9
2,836,416 - Shewana3_2356 0.45 +1.9
2,836,438 - Shewana3_2356 0.47 +0.9
2,836,689 - Shewana3_2356 0.68 +1.9
2,836,986 + +2.9
2,837,069 - -0.5
2,837,134 - Shewana3_2357 0.29 -0.3
2,837,207 + Shewana3_2357 0.63 +2.9
2,837,259 + Shewana3_2357 0.87 -1.1
2,837,754 - -1.0
2,837,874 + Shewana3_2359 0.48 +1.3
2,837,936 - Shewana3_2359 0.73 -1.0

Or see this region's nucleotide sequence