Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2333 and Shewana3_2334 are separated by 96 nucleotides Shewana3_2334 and Shewana3_2335 are separated by 78 nucleotides Shewana3_2335 and Shewana3_2336 overlap by 8 nucleotides Shewana3_2336 and Shewana3_2337 are separated by 95 nucleotides
Shewana3_2333: Shewana3_2333 - permease (RefSeq), at 2,808,718 to 2,809,716
_2333
Shewana3_2334: Shewana3_2334 - protein tyrosine phosphatase (RefSeq), at 2,809,813 to 2,810,319
_2334
Shewana3_2335: Shewana3_2335 - ArsR family transcriptional regulator (RefSeq), at 2,810,398 to 2,810,745
_2335
Shewana3_2336: Shewana3_2336 - protein tyrosine phosphatase (RefSeq), at 2,810,738 to 2,811,154
_2336
Shewana3_2337: Shewana3_2337 - ArsR family transcriptional regulator (RefSeq), at 2,811,250 to 2,811,537
_2337
Position (kb)
2809
2810
2811 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2808.996 kb on - strand, within Shewana3_2333 at 2809.454 kb on - strand, within Shewana3_2333 at 2809.792 kb on + strand at 2809.792 kb on + strand at 2809.800 kb on - strand at 2809.891 kb on + strand at 2810.003 kb on - strand, within Shewana3_2334 at 2810.161 kb on + strand, within Shewana3_2334 at 2810.180 kb on - strand, within Shewana3_2334 at 2810.667 kb on - strand, within Shewana3_2335 at 2810.743 kb on - strand at 2810.804 kb on + strand, within Shewana3_2336 at 2810.855 kb on - strand, within Shewana3_2336 at 2811.036 kb on + strand at 2811.244 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,808,996 - Shewana3_2333 0.28 +2.0 2,809,454 - Shewana3_2333 0.74 +0.9 2,809,792 + +2.9 2,809,792 + +1.3 2,809,800 - -1.0 2,809,891 + +1.3 2,810,003 - Shewana3_2334 0.37 -1.1 2,810,161 + Shewana3_2334 0.69 +1.3 2,810,180 - Shewana3_2334 0.72 -0.1 2,810,667 - Shewana3_2335 0.77 +2.0 2,810,743 - +1.0 2,810,804 + Shewana3_2336 0.16 +1.9 2,810,855 - Shewana3_2336 0.28 +1.9 2,811,036 + +2.9 2,811,244 - +0.3
Or see this region's nucleotide sequence