Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2313 and Shewana3_2314 are separated by 87 nucleotides Shewana3_2314 and Shewana3_2315 are separated by 115 nucleotides Shewana3_2315 and Shewana3_2316 are separated by 72 nucleotides
Shewana3_2313: Shewana3_2313 - alpha amylase, catalytic region (RefSeq), at 2,783,465 to 2,785,525
_2313
Shewana3_2314: Shewana3_2314 - alpha amylase, catalytic region (RefSeq), at 2,785,613 to 2,787,742
_2314
Shewana3_2315: Shewana3_2315 - glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 2,787,858 to 2,788,286
_2315
Shewana3_2316: Shewana3_2316 - hypothetical protein (RefSeq), at 2,788,359 to 2,788,658
_2316
Position (kb)
2785
2786
2787
2788 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2784.627 kb on - strand, within Shewana3_2313 at 2784.721 kb on + strand, within Shewana3_2313 at 2784.791 kb on + strand, within Shewana3_2313 at 2784.810 kb on + strand, within Shewana3_2313 at 2784.818 kb on - strand, within Shewana3_2313 at 2784.952 kb on + strand, within Shewana3_2313 at 2784.977 kb on - strand, within Shewana3_2313 at 2785.186 kb on - strand, within Shewana3_2313 at 2785.502 kb on - strand at 2785.668 kb on + strand at 2785.974 kb on + strand, within Shewana3_2314 at 2785.992 kb on + strand, within Shewana3_2314 at 2786.013 kb on - strand, within Shewana3_2314 at 2786.013 kb on - strand, within Shewana3_2314 at 2786.246 kb on - strand, within Shewana3_2314 at 2786.280 kb on - strand, within Shewana3_2314 at 2786.280 kb on - strand, within Shewana3_2314 at 2786.559 kb on + strand, within Shewana3_2314 at 2786.683 kb on + strand, within Shewana3_2314 at 2786.835 kb on + strand, within Shewana3_2314 at 2786.843 kb on - strand, within Shewana3_2314 at 2786.902 kb on + strand, within Shewana3_2314 at 2787.073 kb on - strand, within Shewana3_2314 at 2787.780 kb on + strand at 2787.969 kb on - strand, within Shewana3_2315 at 2787.999 kb on - strand, within Shewana3_2315 at 2788.224 kb on + strand, within Shewana3_2315 at 2788.372 kb on + strand at 2788.372 kb on + strand at 2788.380 kb on - strand at 2788.442 kb on + strand, within Shewana3_2316
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,784,627 - Shewana3_2313 0.56 +1.3 2,784,721 + Shewana3_2313 0.61 +2.8 2,784,791 + Shewana3_2313 0.64 +0.0 2,784,810 + Shewana3_2313 0.65 -1.7 2,784,818 - Shewana3_2313 0.66 -0.5 2,784,952 + Shewana3_2313 0.72 +0.0 2,784,977 - Shewana3_2313 0.73 +0.8 2,785,186 - Shewana3_2313 0.84 -0.5 2,785,502 - -0.3 2,785,668 + +0.3 2,785,974 + Shewana3_2314 0.17 +1.8 2,785,992 + Shewana3_2314 0.18 +0.3 2,786,013 - Shewana3_2314 0.19 +2.8 2,786,013 - Shewana3_2314 0.19 +0.5 2,786,246 - Shewana3_2314 0.30 +1.4 2,786,280 - Shewana3_2314 0.31 +2.3 2,786,280 - Shewana3_2314 0.31 -1.2 2,786,559 + Shewana3_2314 0.44 +1.8 2,786,683 + Shewana3_2314 0.50 +0.4 2,786,835 + Shewana3_2314 0.57 +0.8 2,786,843 - Shewana3_2314 0.58 +1.0 2,786,902 + Shewana3_2314 0.61 +0.8 2,787,073 - Shewana3_2314 0.69 -0.3 2,787,780 + +1.3 2,787,969 - Shewana3_2315 0.26 +0.5 2,787,999 - Shewana3_2315 0.33 -0.4 2,788,224 + Shewana3_2315 0.85 +0.8 2,788,372 + +1.3 2,788,372 + +1.8 2,788,380 - +0.0 2,788,442 + Shewana3_2316 0.28 +2.8
Or see this region's nucleotide sequence