Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2311
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
2,777,468 | - | Shewana3_2310 | 0.32 | +1.2 | |
2,777,493 | + | Shewana3_2310 | 0.34 | +2.9 | |
2,777,582 | - | Shewana3_2310 | 0.41 | -0.4 | |
2,777,704 | - | Shewana3_2310 | 0.51 | +0.2 | |
2,777,768 | - | Shewana3_2310 | 0.56 | -0.3 | |
2,777,768 | - | Shewana3_2310 | 0.56 | +1.2 | |
2,777,802 | + | Shewana3_2310 | 0.59 | +0.1 | |
2,777,892 | + | Shewana3_2310 | 0.66 | +0.9 | |
2,777,928 | - | Shewana3_2310 | 0.69 | +0.2 | |
2,777,972 | + | Shewana3_2310 | 0.72 | +1.3 | |
2,778,036 | + | Shewana3_2310 | 0.77 | -1.4 | |
2,778,321 | + | +0.2 | |||
2,778,433 | + | +0.1 | |||
2,778,433 | + | -0.6 | |||
2,778,433 | + | -1.6 | |||
2,778,441 | - | +3.2 | |||
2,778,441 | - | +0.3 | |||
2,778,602 | + | +2.1 | |||
2,778,635 | + | Shewana3_2311 | 0.11 | -0.5 | |
2,778,649 | - | Shewana3_2311 | 0.12 | -1.9 | |
2,778,658 | - | Shewana3_2311 | 0.13 | +0.6 | |
2,778,856 | + | Shewana3_2311 | 0.25 | +0.1 | |
2,778,995 | - | Shewana3_2311 | 0.33 | -1.3 | |
2,779,169 | - | Shewana3_2311 | 0.44 | -0.6 | |
2,779,191 | + | Shewana3_2311 | 0.46 | +0.7 | |
2,779,442 | - | Shewana3_2311 | 0.61 | -0.2 | |
2,779,528 | - | Shewana3_2311 | 0.66 | -0.3 | |
2,779,844 | + | Shewana3_2311 | 0.86 | +1.9 | |
2,780,254 | - | -0.4 | |||
2,780,367 | - | +1.3 |
Or see this region's nucleotide sequence