Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2263

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2262 and Shewana3_2263 are separated by 121 nucleotidesShewana3_2263 and Shewana3_2264 are separated by 90 nucleotides Shewana3_2262: Shewana3_2262 - glutathione S-transferase domain-containing protein (RefSeq), at 2,723,734 to 2,724,405 _2262 Shewana3_2263: Shewana3_2263 - hypothetical protein (RefSeq), at 2,724,527 to 2,724,751 _2263 Shewana3_2264: Shewana3_2264 - sulphate transporter (RefSeq), at 2,724,842 to 2,726,599 _2264 Position (kb) 2724 2725Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2723.732 kb on - strandat 2723.739 kb on - strandat 2723.757 kb on - strandat 2723.873 kb on + strand, within Shewana3_2262at 2723.895 kb on - strand, within Shewana3_2262at 2723.938 kb on - strand, within Shewana3_2262at 2724.178 kb on - strand, within Shewana3_2262at 2724.198 kb on - strand, within Shewana3_2262at 2724.220 kb on + strand, within Shewana3_2262at 2724.584 kb on + strand, within Shewana3_2263at 2724.599 kb on - strand, within Shewana3_2263at 2724.622 kb on + strand, within Shewana3_2263at 2724.640 kb on + strand, within Shewana3_2263at 2724.973 kb on - strandat 2724.973 kb on - strandat 2725.220 kb on + strand, within Shewana3_2264at 2725.228 kb on - strand, within Shewana3_2264at 2725.337 kb on + strand, within Shewana3_2264at 2725.514 kb on + strand, within Shewana3_2264at 2725.514 kb on + strand, within Shewana3_2264at 2725.640 kb on + strand, within Shewana3_2264at 2725.727 kb on + strand, within Shewana3_2264

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,723,732 - +0.5
2,723,739 - +0.5
2,723,757 - -0.7
2,723,873 + Shewana3_2262 0.21 -1.3
2,723,895 - Shewana3_2262 0.24 +0.8
2,723,938 - Shewana3_2262 0.30 +0.0
2,724,178 - Shewana3_2262 0.66 -1.3
2,724,198 - Shewana3_2262 0.69 +2.8
2,724,220 + Shewana3_2262 0.72 -0.3
2,724,584 + Shewana3_2263 0.25 -1.8
2,724,599 - Shewana3_2263 0.32 +0.8
2,724,622 + Shewana3_2263 0.42 +0.7
2,724,640 + Shewana3_2263 0.50 +1.0
2,724,973 - -0.1
2,724,973 - +0.2
2,725,220 + Shewana3_2264 0.22 +1.2
2,725,228 - Shewana3_2264 0.22 +2.1
2,725,337 + Shewana3_2264 0.28 -0.5
2,725,514 + Shewana3_2264 0.38 -0.2
2,725,514 + Shewana3_2264 0.38 +0.5
2,725,640 + Shewana3_2264 0.45 +2.8
2,725,727 + Shewana3_2264 0.50 +1.2

Or see this region's nucleotide sequence