Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2205 and Shewana3_2206 overlap by 1 nucleotides Shewana3_2206 and Shewana3_2207 are separated by 630 nucleotides
Shewana3_2205: Shewana3_2205 - AraC family transcriptional regulator (RefSeq), at 2,646,442 to 2,647,620
_2205
Shewana3_2206: Shewana3_2206 - diguanylate cyclase (RefSeq), at 2,647,620 to 2,648,585
_2206
Shewana3_2207: Shewana3_2207 - TonB-dependent receptor (RefSeq), at 2,649,216 to 2,652,050
_2207
Position (kb)
2647
2648
2649 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2646.697 kb on + strand, within Shewana3_2205 at 2646.697 kb on + strand, within Shewana3_2205 at 2646.705 kb on - strand, within Shewana3_2205 at 2646.817 kb on + strand, within Shewana3_2205 at 2646.992 kb on + strand, within Shewana3_2205 at 2647.092 kb on - strand, within Shewana3_2205 at 2647.170 kb on + strand, within Shewana3_2205 at 2647.170 kb on + strand, within Shewana3_2205 at 2647.559 kb on - strand at 2647.559 kb on - strand at 2647.661 kb on - strand at 2647.952 kb on + strand, within Shewana3_2206 at 2648.126 kb on + strand, within Shewana3_2206 at 2648.134 kb on - strand, within Shewana3_2206 at 2648.229 kb on + strand, within Shewana3_2206 at 2648.280 kb on - strand, within Shewana3_2206 at 2648.284 kb on + strand, within Shewana3_2206 at 2648.318 kb on + strand, within Shewana3_2206 at 2648.318 kb on + strand, within Shewana3_2206 at 2648.479 kb on + strand, within Shewana3_2206 at 2648.487 kb on - strand, within Shewana3_2206 at 2648.534 kb on + strand at 2648.606 kb on - strand at 2649.081 kb on - strand at 2649.139 kb on - strand at 2649.185 kb on - strand at 2649.348 kb on + strand at 2649.454 kb on + strand at 2649.536 kb on + strand, within Shewana3_2207 at 2649.544 kb on - strand, within Shewana3_2207 at 2649.570 kb on - strand, within Shewana3_2207
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,646,697 + Shewana3_2205 0.22 +1.7 2,646,697 + Shewana3_2205 0.22 -0.5 2,646,705 - Shewana3_2205 0.22 +2.8 2,646,817 + Shewana3_2205 0.32 -0.7 2,646,992 + Shewana3_2205 0.47 -0.9 2,647,092 - Shewana3_2205 0.55 -1.6 2,647,170 + Shewana3_2205 0.62 -0.9 2,647,170 + Shewana3_2205 0.62 +0.4 2,647,559 - +1.2 2,647,559 - -0.2 2,647,661 - +0.0 2,647,952 + Shewana3_2206 0.34 +2.8 2,648,126 + Shewana3_2206 0.52 +0.0 2,648,134 - Shewana3_2206 0.53 -1.5 2,648,229 + Shewana3_2206 0.63 +1.3 2,648,280 - Shewana3_2206 0.68 -0.3 2,648,284 + Shewana3_2206 0.69 -0.0 2,648,318 + Shewana3_2206 0.72 +0.0 2,648,318 + Shewana3_2206 0.72 +2.8 2,648,479 + Shewana3_2206 0.89 +1.3 2,648,487 - Shewana3_2206 0.90 +0.1 2,648,534 + -1.3 2,648,606 - +1.3 2,649,081 - +1.8 2,649,139 - -0.1 2,649,185 - -0.5 2,649,348 + +0.8 2,649,454 + -0.4 2,649,536 + Shewana3_2207 0.11 +0.0 2,649,544 - Shewana3_2207 0.12 -0.5 2,649,570 - Shewana3_2207 0.12 -1.4
Or see this region's nucleotide sequence