Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2196

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2194 and Shewana3_2195 are separated by 96 nucleotidesShewana3_2195 and Shewana3_2196 overlap by 1 nucleotidesShewana3_2196 and Shewana3_2197 are separated by 202 nucleotides Shewana3_2194: Shewana3_2194 - hypothetical protein (RefSeq), at 2,634,858 to 2,635,124 _2194 Shewana3_2195: Shewana3_2195 - hypothetical protein (RefSeq), at 2,635,221 to 2,635,685 _2195 Shewana3_2196: Shewana3_2196 - PepSY-associated TM helix domain-containing protein (RefSeq), at 2,635,685 to 2,636,854 _2196 Shewana3_2197: Shewana3_2197 - beta-lactamase domain-containing protein (RefSeq), at 2,637,057 to 2,637,953 _2197 Position (kb) 2635 2636 2637Strain fitness (log2 ratio) -1 0 1 2 3at 2634.687 kb on - strandat 2634.690 kb on + strandat 2634.809 kb on + strandat 2634.829 kb on - strandat 2634.829 kb on - strandat 2634.864 kb on - strandat 2635.125 kb on + strandat 2635.125 kb on + strandat 2635.295 kb on + strand, within Shewana3_2195at 2635.303 kb on - strand, within Shewana3_2195at 2635.303 kb on - strand, within Shewana3_2195at 2635.303 kb on - strand, within Shewana3_2195at 2635.453 kb on + strand, within Shewana3_2195at 2635.543 kb on + strand, within Shewana3_2195at 2635.735 kb on + strandat 2635.876 kb on + strand, within Shewana3_2196at 2635.886 kb on + strand, within Shewana3_2196at 2635.925 kb on - strand, within Shewana3_2196at 2635.957 kb on - strand, within Shewana3_2196at 2636.227 kb on + strand, within Shewana3_2196at 2636.311 kb on - strand, within Shewana3_2196at 2636.328 kb on - strand, within Shewana3_2196at 2636.563 kb on + strand, within Shewana3_2196at 2636.632 kb on + strand, within Shewana3_2196at 2636.808 kb on + strandat 2636.891 kb on + strandat 2637.132 kb on - strandat 2637.199 kb on - strand, within Shewana3_2197at 2637.208 kb on + strand, within Shewana3_2197at 2637.216 kb on - strand, within Shewana3_2197at 2637.345 kb on - strand, within Shewana3_2197at 2637.460 kb on - strand, within Shewana3_2197at 2637.496 kb on + strand, within Shewana3_2197

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,634,687 - +2.8
2,634,690 + +1.2
2,634,809 + +1.8
2,634,829 - +2.8
2,634,829 - +2.8
2,634,864 - +2.8
2,635,125 + +1.8
2,635,125 + +1.2
2,635,295 + Shewana3_2195 0.16 -0.0
2,635,303 - Shewana3_2195 0.18 +0.3
2,635,303 - Shewana3_2195 0.18 +0.2
2,635,303 - Shewana3_2195 0.18 -0.0
2,635,453 + Shewana3_2195 0.50 +1.2
2,635,543 + Shewana3_2195 0.69 +2.8
2,635,735 + +0.8
2,635,876 + Shewana3_2196 0.16 +2.8
2,635,886 + Shewana3_2196 0.17 +0.9
2,635,925 - Shewana3_2196 0.21 -0.2
2,635,957 - Shewana3_2196 0.23 -1.2
2,636,227 + Shewana3_2196 0.46 +0.8
2,636,311 - Shewana3_2196 0.54 +0.8
2,636,328 - Shewana3_2196 0.55 +0.5
2,636,563 + Shewana3_2196 0.75 +0.2
2,636,632 + Shewana3_2196 0.81 +0.2
2,636,808 + -0.7
2,636,891 + +0.5
2,637,132 - -0.7
2,637,199 - Shewana3_2197 0.16 +1.8
2,637,208 + Shewana3_2197 0.17 +2.8
2,637,216 - Shewana3_2197 0.18 +0.5
2,637,345 - Shewana3_2197 0.32 -1.3
2,637,460 - Shewana3_2197 0.45 +1.8
2,637,496 + Shewana3_2197 0.49 +0.2

Or see this region's nucleotide sequence