Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2194 and Shewana3_2195 are separated by 96 nucleotides Shewana3_2195 and Shewana3_2196 overlap by 1 nucleotides Shewana3_2196 and Shewana3_2197 are separated by 202 nucleotides
Shewana3_2194: Shewana3_2194 - hypothetical protein (RefSeq), at 2,634,858 to 2,635,124
_2194
Shewana3_2195: Shewana3_2195 - hypothetical protein (RefSeq), at 2,635,221 to 2,635,685
_2195
Shewana3_2196: Shewana3_2196 - PepSY-associated TM helix domain-containing protein (RefSeq), at 2,635,685 to 2,636,854
_2196
Shewana3_2197: Shewana3_2197 - beta-lactamase domain-containing protein (RefSeq), at 2,637,057 to 2,637,953
_2197
Position (kb)
2635
2636
2637 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2634.687 kb on - strand at 2634.690 kb on + strand at 2634.809 kb on + strand at 2634.829 kb on - strand at 2634.829 kb on - strand at 2634.864 kb on - strand at 2635.125 kb on + strand at 2635.125 kb on + strand at 2635.295 kb on + strand, within Shewana3_2195 at 2635.303 kb on - strand, within Shewana3_2195 at 2635.303 kb on - strand, within Shewana3_2195 at 2635.303 kb on - strand, within Shewana3_2195 at 2635.453 kb on + strand, within Shewana3_2195 at 2635.543 kb on + strand, within Shewana3_2195 at 2635.735 kb on + strand at 2635.876 kb on + strand, within Shewana3_2196 at 2635.886 kb on + strand, within Shewana3_2196 at 2635.925 kb on - strand, within Shewana3_2196 at 2635.957 kb on - strand, within Shewana3_2196 at 2636.227 kb on + strand, within Shewana3_2196 at 2636.311 kb on - strand, within Shewana3_2196 at 2636.328 kb on - strand, within Shewana3_2196 at 2636.563 kb on + strand, within Shewana3_2196 at 2636.632 kb on + strand, within Shewana3_2196 at 2636.808 kb on + strand at 2636.891 kb on + strand at 2637.132 kb on - strand at 2637.199 kb on - strand, within Shewana3_2197 at 2637.208 kb on + strand, within Shewana3_2197 at 2637.216 kb on - strand, within Shewana3_2197 at 2637.345 kb on - strand, within Shewana3_2197 at 2637.460 kb on - strand, within Shewana3_2197 at 2637.496 kb on + strand, within Shewana3_2197
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,634,687 - +2.8 2,634,690 + +1.2 2,634,809 + +1.8 2,634,829 - +2.8 2,634,829 - +2.8 2,634,864 - +2.8 2,635,125 + +1.8 2,635,125 + +1.2 2,635,295 + Shewana3_2195 0.16 -0.0 2,635,303 - Shewana3_2195 0.18 +0.3 2,635,303 - Shewana3_2195 0.18 +0.2 2,635,303 - Shewana3_2195 0.18 -0.0 2,635,453 + Shewana3_2195 0.50 +1.2 2,635,543 + Shewana3_2195 0.69 +2.8 2,635,735 + +0.8 2,635,876 + Shewana3_2196 0.16 +2.8 2,635,886 + Shewana3_2196 0.17 +0.9 2,635,925 - Shewana3_2196 0.21 -0.2 2,635,957 - Shewana3_2196 0.23 -1.2 2,636,227 + Shewana3_2196 0.46 +0.8 2,636,311 - Shewana3_2196 0.54 +0.8 2,636,328 - Shewana3_2196 0.55 +0.5 2,636,563 + Shewana3_2196 0.75 +0.2 2,636,632 + Shewana3_2196 0.81 +0.2 2,636,808 + -0.7 2,636,891 + +0.5 2,637,132 - -0.7 2,637,199 - Shewana3_2197 0.16 +1.8 2,637,208 + Shewana3_2197 0.17 +2.8 2,637,216 - Shewana3_2197 0.18 +0.5 2,637,345 - Shewana3_2197 0.32 -1.3 2,637,460 - Shewana3_2197 0.45 +1.8 2,637,496 + Shewana3_2197 0.49 +0.2
Or see this region's nucleotide sequence